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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttctatatctcaaacaatcaaaaacactatctacacttgaaatcttgatccatttacaatgttcaagactattatgagcagtgcataatcagt...

Basic information

species Glycine max
transcript GLYMA19G01200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g29220.1 (Oryza sativa), 5'ss of exon 4
TGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttctatatctcaaacaatcaaaaacactatctacacttgaaatcttgatccatttacaatgttcaagactattatgagcagtgcat-aatcagt
| ||||| |||||||| || |||| ||||||||| || ||||| ||||||||||||||||||||  |||| ||||||||||||||||| ||  | ||||||| ||   ||  |   |    |  ||      | | |         |||| |   | |    ||| |||   |    | | ||     |   |   |||| 
TTGAGAAGGAGATTGGGGCCAAGTATGAGGAGGATCTCGATGCCATGCTTCCAAAGTGTGATGTCGTTGTGATCAACATGCCTCTTACGGAGAAAACAAGgtttatcgtccttcatt---gcgttcttgtttattgttc-----caaaatttctgtgctagcacattgtcttatctgaatttgtatgcttttttgttcag-

upper sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g29180.1 (Oryza sativa), 5'ss of exon 3
TGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgt--atactttctatatctcaaacaatcaaaaacactatctacacttgaaatcttgatccatttacaatgttcaagactattatgagcagtgcataatcagt
| |||||||| ||||| || || | ||| ||||| || ||||| |||||||||||||||||||| ||||| ||||| |  |||||||| ||  | |||||||   |  |     |||         |   ||| |  || ||||    | ||||  |   || |  | | |  | || | || |   |||            
TTGAGAAAGAAATTGGGGCCAAATATGAAGAGGATCTCGATGCTATGCTTCCAAAGTGTGATGTCATTGTGATCAATACACCTCTTACAGAGAAAACAAGgttcctgatgatcgtattcttgtttgttgcaaa-atcatatacatagtacatct--acttatctgaactttgtatgattctt-tcttcag------------

upper sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G049811_T01 (Zea mays), 5'ss of exon 3
TGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc----tatatctcaaacaatcaaaa-acactatctacacttg--aaatcttgatccatttacaatgttcaagactattatgagcagtgcataatcagt
| |||||||| ||||| || || |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||  |||||||| ||  | ||||||| |   |||    | || || | |    ||||| |   |  | | | ||    | | ||| |   | |    | ||||                            
TTGAGAAAGAAATTGGGGCCAAATTTGAGGAGGACCTGGATGCTATGCTTCCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattcatcatgtacctgacatttccaaaatagtttgacaatattttctgagttttgtttgctgtttttttttcag---------------------------

upper sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G147714_T01 (Zea mays), 5'ss of exon 4
TGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGg--tatactttctatatctcaaacaat-caaaaacactatc----tacacttgaaatcttgatccatttacaatgttcaagactattatgagcagtgcataatcagt
| |||||||| ||||| || || |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||  |||||||| ||  | ||||||  | || |    || |  |  ||| | | |||| | | |     ||   |   | | ||| |   | |    | ||||                            
TTGAGAAAGAAATTGGGGCCAAATTTGAGGAGGACCTGGATGCTATGCTTCCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattcatcatgtacctgacatttccaaaatagtttgacagtattttctgagttttgtttgctgtttttttttcag---------------------------

upper sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G423972_T02 (Zea mays), 5'ss of exon 2
TGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgt--atactttctatatctcaaacaatcaaaaacactatctacacttgaaatcttgatccatttacaatgttcaagactattatgagcagtgcataatcagt
| |||||||| ||||| || || |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||  |||||||| ||  | |||||||   || |  | || |  |  ||| |   ||| |   |||  ||   |  |  |||    | |    ||||       |                      
TTGAGAAAGAAATTGGGGCCAAATTTGAGGAGGACCTGGATGCTATGCTTCCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattcaccatgtacctgacatttccaaa-atagtctg-acagtattttctgagttttgtttgctgttttttttcag---------------------

upper sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G362021_T01 (Zea mays), 5'ss of exon 4
TGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgt--atactttctatatctcaaacaat-caaaaacactatctacacttgaaatcttgatccatttacaatgttcaagactattatgagcagtgcataatcagt
| |||||||| ||||| || || |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||  |||||||| ||  | |||||||   || |    || |  |  ||| | | |||| | | |  ||| |  |  |  |||    | |    ||||       |                      
TTGAGAAAGAAATTGGGGCCAAATTTGAGGAGGACCTGGATGCTATGCTTCCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattcatcatgtacctgacatttccaaaatagt-ttgacagt--attttctgagttttgtttgctgttttttttcag---------------------

upper sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G124919_T01 (Zea mays), 5'ss of exon 4
TGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGg--tatactttctatatctcaaacaat-caaaaacactatc----tacacttgaaatcttgatccatttacaatgttcaagactattatgagcagtgcataatcagt
| |||||||| ||||| |  || |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||  |||||||| ||  | ||||||  | || |    || |  |  ||| | | |||| | | |     ||   |   | | ||| |   | |    | ||||                            
TTGAGAAAGAAATTGGGGTCAAATTTGAGGAGGACCTGGATGCTATGCTTCCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattcatcatgtacctgacatttccaaaatagtttgacagtattttctgagttttgtttgctgtttttttttcag---------------------------

upper sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G418005_T01 (Zea mays), 5'ss of exon 2
TGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgt--atactttctatatctcaaacaat-caaaaacactatctacacttgaaatcttgatccatttacaatgttcaagactattatgagcagtgcataatcagt
| |||||||| ||||| || || |||||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||  |||||||| ||  | |||||||   || |    || |  |  ||| | | |||| | | |  ||| |  |  |  |||    | |    ||||       |                      
TTGAGAAAGAAATTGGGGCCAAATTTGAGGAGGACCTGGATGCTATGCTTCCAAAGTTTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattcatcatgtacctgacatttccaaaatagt-ttgacagt--attttctgagttttgtttgctgttttttttcag---------------------

upper sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 3
TGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttctatatctcaaacaatcaaaaacactatctacacttgaaatcttgatccatttacaatgttcaagactattatgagcagtgcataatcagt-
|||||||  |||| |||||||||||||| |||||  ||||||  |||||||| || |||||  ||||||| ||||||||||||||||||||| | |||| |||    ||  || ||  |    |||      | |   |    |  |||  || |    ||  | |     | ||  | |    |  | ||| ||| | | 
TGGAGAATCAGATAGGAGCAAAGTTTGAAGAGGATGTTGATGTGATGCTTCCCAAATGTGACATAATTGTCATCAACATGCCTCTTACTGAAAAAACAAAgtaacgatttcatctcatatttgatctggctgatttgttctcatctaaaaattaactttttagccaaacataggatcagttcatgtggagca-aattattt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017267|gb|CX704009.1|CX704009
EST:     CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAG                         AGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
genomic: CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc ... tgtgattcagAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
EST: gi|33389257|gb|CA852464.1|CA852464
EST:     CCAAAGTGTGATGTAGTTGTTATCAACATGCCTCTTACTGAACAGACAAG                         AGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
genomic: CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc ... tgtgattcagAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
EST: gi|19452974|gb|BM954384.1|BM954384
EST:     CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAG                         AGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTG
genomic: CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc ... tgtgattcagAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTG
EST: gi|22521954|gb|BU080765.1|BU080765
EST:     CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAG                         AGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
genomic: CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc ... tgtgattcagAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
EST: gi|19934596|gb|BQ079626.1|BQ079626
EST:     CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAG                         AGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
genomic: CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc ... tgtgattcagAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
EST: gi|37996280|gb|CF807869.1|CF807869
EST:     AAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAG                         AGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
genomic: AAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc ... tgtgattcagAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
EST: gi|192327787|gb|FK022066.1|FK022066
EST:     CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAG                         AGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
genomic: CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc ... tgtgattcagAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
EST: gi|254315424|gb|GR825233.1|GR825233
EST:     CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAG                         AGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
genomic: CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc ... tgtgattcagAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
EST: gi|254315423|gb|GR825232.1|GR825232
EST:     CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAG                         AGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
genomic: CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc ... tgtgattcagAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT
EST: gi|6848238|gb|AW350528.1|AW350528
EST:     CCAAAGTGTGATGTAATTGTTATCAACATGNNNCNTANNGAACAGACAAG                         AGGATTGTNNGACAAAAACAGAATTGNNAAGTGCAAGAAAGGTGTGGTGAT
genomic: CCAAAGTGTGATGTAATTGTTATCAACATGCCTCTTACTGAACAGACAAGgtatactttc ... tgtgattcagAGGATTGTTTGACAAAAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGAT