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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGGATATGCCTGTGGCTGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGCGATCTTAAACCCGgtatgcctacataaattttgtacttcctggtttttgttgagtcttatctggtagctcttaatggaaaagtttgttacttaatgatttgtggaattttgca...

Basic information

species Glycine max
transcript GLYMA19G00650.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G00650.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g38080.1 (Oryza sativa), 5'ss of exon 4
TGCTTGGATATGCCTGTGGCTGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGCGATCTTAAACCCGgtatgcctacataaattttgtacttcctggtt--tttgttgagtcttatctggtagctcttaatggaaaagtttgttacttaatgatttgtggaattttgca---
 || ||||    | ||| ||||||||||||||  | |||||||| ||||| ||||||||||| ||  | || | ||||||||| || ||||||||||| |||| |  | |    |||| | |   |||||||  ||  | |    |||  |||| | | |          |  |  ||  || | ||| ||  |  |   |    
AGCCTGGAGCCTCGTGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGCGATCATTCATCGTGATCTTAAACCTGgtaagattgct---atttggaaa--cctggttgcttcatgggcatttacatggtggatttctgcaatccggaataataactattcattagttcatatacaccatg

upper sequence: GLYMA19G00650.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G165231_T01 (Zea mays), 5'ss of exon 3
TGCTTGGATATGCCTGTGGCTGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGCGATCTTAAACCCGgtatgcctacataaattttgtacttcctggtttttgttgagtcttatctggtagctcttaatggaaaagtttgttacttaatgatttgtggaattttgca---
 || | ||    | ||| || || || |||||  | || ||||||||||| |||||||| |||||  | |||||||||||||| || |||||||| || |||| | |||   |  || ||  ||      |   || |   |||    |  |  ||  |  |    | ||||   |  |     |  ||    || | |    
AGCCTTGAGCCTCGTGTAGCAGTGGGGTTTGCATTGGACATTGCCCGAGCTATGGAATGCTTACATGCACATGGGATCATTCATCGTGATCTTAAGCCTGgtaagactagtcattttgtgatctgatcattgcatgcta--tctatattattcactgcttttctccatgtttaccatgtgtccgtc-gttactttcttcggaa

upper sequence: GLYMA19G00650.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g09290.t01 (Vitis vinifera), 5'ss of exon 3
TGCTTGGATATGCCTGTGGCTGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGCGATCTTAAACCCGgtatgcctacataaa----ttttgtacttcctggtttttgttgagtcttatctggtagctcttaatggaaaagtttgttacttaatgatttgtggaattttgca
|||||||||   |   | || ||||| ||||||||||||||||| ||||||||||||||  | ||||||||||||||||| || || ||||| ||||| |||| || |     ||      ||  | |||   |  | | ||   | | ||  |  |    ||  ||||    | |   |   |      || | ||    |||
TGCTTGGATGCTCGAATTGCAGTTGGTTTTGCTCTTGATATTGCTCGAGCAATGGAATGCCTGCACTCTCATGGGATCATACATCGTGATCTGAAACCTGgtaagctttttagaagacccctttgaattcagagaatatcttagatttaattagacaagggttt-tgga---ttctcaaatagacctcactgggaaaacaggca