Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTATGGAGGAGGCAGGAGTAGATGGTGCACTCATTGTGCAGCCAATTAATCATAAATTTGATCATAGTTATGTCACAAggtatgttcaacaatttttttacacatttgatgtaagagctcagttattcagcacttttatgttaaacaatactgaaatgagagtttgtatggatggaat...

Basic information

species Glycine max
transcript GLYMA18G52130.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52130.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0146g00120.t01 (Vitis vinifera), 5'ss of exon 3
GTGTATGGAGGAGGCAGGAGTAGATGGTGCACTCATTGTGCAGCCAATTAATCATAAATTTGATCATAGTTATGTCACAAggtatgttcaa---caatttttttacacatttgatgtaagagctcagttattcagcacttttatgttaaacaatactgaaatgagagtttgtatggatggaat
 |||||||| || |||   ||||||||||| || |||||||| || || ||||||||||||||||||  ||  || |||||||  ||| ||    ||||| ||  || ||  |  | |  |  ||   | ||||  | ||| |  |  || |||  ||  |||  |    ||    | |  | 
-TGTATGGAAGAAGCACATGTAGATGGTGCGCTAATTGTGCAACCTATCAATCATAAATTTGATCATTCTTTAGTGACAAGgttggtttaagtataatttattcgcatatcggtagcagaatatctaat-ttcaatattttcacttgtaagaat-ttggtatgttatgaagtcacaaagccac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300837|gb|FG989734.1|FG989734
EST:     ACTCATTGTGCAGCCAATTAATCATAAATTTGATCATAGTTATGTCACAA                         GCGTTTTGAATAAATACCCAACGAAATTTGTTGGTTGTTGCCTTGCTAATC
genomic: ACTCATTGTGCAGCCAATTAATCATAAATTTGATCATAGTTATGTCACAAggtatgttca ... tcattggacaGCGTTTTGAATAAATACCCAACGAAATTTGTTGGTTGTTGCCTTGCTAATC
EST: gi|209711038|gb|BW681348.1|BW681348
EST:     ACTCATTGTGCAGCCAATTAATCATAAATTTGATCATAGTTATGTCACAA                         GCGTTTTGAATAAATACCCAACGAAATTTGTTGGTTGTTGCCTTGCTAATC
genomic: ACTCATTGTGCAGCCAATTAATCATAAATTTGATCATAGTTATGTCACAAggtatgttca ... tcattggacaGCGTTTTGAATAAATACCCAACGAAATTTGTTGGTTGTTGCCTTGCTAATC
EST: gi|209696782|gb|BW680403.1|BW680403
EST:     ACTCATTGTGCAGCCAATTAATCATAAATTTGATCATAGTTATGTCACAA                         GCGTTTTGAATAAATACCCAACGAAATTTGTTGGTTGTTGCCTTGCTAATC
genomic: ACTCATTGTGCAGCCAATTAATCATAAATTTGATCATAGTTATGTCACAAggtatgttca ... tcattggacaGCGTTTTGAATAAATACCCAACGAAATTTGTTGGTTGTTGCCTTGCTAATC