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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCATCTGGTTTCTTTAGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCATTACCATCTCCACGgttagatacatatctctgattaaataatttgaatagacaacaataattaattcatcacaaatttacaacacaagctataaaacatatacactgacacagg...

Basic information

species Glycine max
transcript GLYMA18G51520.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51520.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G38560.1 (Arabidopsis thaliana), 5'ss of exon 2
CGTCATCTGGTTTCTTTAGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCATTACCATCTCCACGgttagatacatatctctgattaaataatttgaatagacaacaataattaattcatcacaaatttacaacacaagctataaaacatatacactgacacagg
|| ||| ||||| |  |||||||||| || || || ||||| || || |||||||||||||| ||||| || ||| | ||||| ||||| |||||||| |||     | ||  |||          || |   || || | || | |||     | | || |     ||| || ||  ||  ||| |  |    | ||| 
CGCCATTTGGTTACACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATGgt--accaaatgcctc----------atcttcttaaaccataa-acttatccttttataact-----acataaacttcaatgcatgtgtat--gcgcag-

upper sequence: GLYMA18G51520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0083g00330.t01 (Vitis vinifera), 5'ss of exon 2
CGTCATCTGGTTTCTTTAGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCATTACCATCTCCACGgttagatacatatctctgattaaataatttgaatagacaacaa---taattaattcatcacaaatttacaacacaagctataaaacatatacactgacacagg
|| ||| |||||||  | || |||||||||||||| |||||||| ||||| ||||| ||||| |  || || |||||||| ||||||||||||||||| ||| ||||  |||  | ||| |  | ||   |  || ||    |   | | || || | | |  ||  | ||  || || || |   ||   | |  | | |  
CGGCATTTGGTTTCACTTGTGGGTTACTGTATATCTGAGCATCAAAGATTACTTGTCTATGATTTCGTACCAAACGATACCCTTCATTACCATCTCCATGgtaagat--atacttttgagtttacaaaaagggtaaaccttgaattttaatagttgaactcggatgcataat-catgcaattatgtatgctctcaaataaaat