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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAATTTCTAGTTAGTGCTGgtaatagtttcatctgattatagtcataaggttaatacaatatcatttttcttgctatgatgatttagtgttctgatttgtgtatactctaatcggcatttttcttgttggattatgattttttgtgtttctctcactctctcaactatttctgatgtacttttactgatttctgtgtttcctccactgctttccag

Basic information

species Glycine max
transcript GLYMA18G51310.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51310.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g04550.t01 (Vitis vinifera), 5'ss of exon 3
TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAATTTCTAGTTAGTGCTGgtaatagtttcatctgattatagtcataaggttaatacaatatcatttttcttgctatgatgatttagtgttctgat-ttgtgtatactctaatcggcatttttcttgttggattatgattttttgtgtttctctcactctctcaactat--ttctgatgtacttttactgatttctgtgtttcctccactgctttccag
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TGCAGGAAACAGAAAGATCTATATTTATGGATGGCCAAATGCCCCAATGGTCCATCTGTAAAATTTATGGTTGATGCTGgtaattttctgctctagtttcaagtattca-tttgcatggtaatatgagtttta----gattgcctaatggacatatattttatgtattctgcatcattttttgtaccttggaactaacttatttaagtaagagggatcctttttcttaagattttaaggaagaacagctaattaatgagacatattttgtttattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404906|gb|EV274720.1|EV274720
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAATTTCTAGTTAGTGCTA                         TTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAATTTCTAGTTAGTGCTGgtaatagttt ... tgctttccagTTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCC
EST: gi|16996384|gb|BM085756.1|BM085756
EST:     GATGGCAAAATGCCCCAATGGCCCATCTGTAAAATTTCTAGTTAGTGCTG                         TTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAATTTCTAGTTAGTGCTGgtaatagttt ... tgctttccagTTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCC