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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAATGGAGATGTTTCCTCTTAAGATTTCCAAGGCTGTCTTTGTTGCTGCAGCAATGTTGACTAGTGGTCAAAGTACTCTTGATATTATTTCTCAACAGgttttttcactgctgctgcatcttcattttcacttgttctgtaatctgaaatctgaaaatctctaccaaacaagttacacaatggaaaaggcagtgcatt...

Basic information

species Glycine max
transcript GLYMA18G50420.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G50420.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g00390.t01 (Vitis vinifera), 5'ss of exon 3
TGCAATGGAGATGTTTCCTCTTAAGATTTCCAAGGCTGTCTTTGTTGCTGCAGCAATGTTGACTAGTGGTCAAAGTACTCTTGATATTATTTCTCAACAGgtttt----ttcactgctgctgcatcttcattttcacttgttctgtaatctg-aaatctgaaaatctctaccaaacaagttacacaatggaaaaggcagtgcatt
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CATGATGGAGTTATTCCCTTCTAAAGTTTCAAAGGCTGTTTTCGTTGCTGCAGCAATGTTGACTAGTGGACAAAGTACTCTTGATATGTTCTCCCAAAAGgtttcaaacttcatt-ctatagattattaaatttggtggaagcaatgatttccaaataagtgaaatgatcctag--aatttgaaatatgaaaaatgct-tccat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105517|gb|BI893257.1|BI893257
EST:     CAGCAATGTTGACTAGTGGTCAAAGTACTCTTGATATTATTTCTCAACAG                         GCAGGTTCAAATGATCTTATGCAACAAGCTCAGACTTTTATATATGCTAAT
genomic: CAGCAATGTTGACTAGTGGTCAAAGTACTCTTGATATTATTTCTCAACAGgttttttcac ... tctgatgcagGCAGGTTCAAATGATCTTATGCAACAAGCTCAGACTTTTATATATGCTAAT