Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGATCTAAAGCTGCCGGATTCTTTTGATCAACTGGTTTCTGATATGAAGAACAATCAGTATGATGCAAAAACTTTTGCATTCATGCTAAGGGGAATGgtaagttgcttgtttcatttaacacgaagtgttgtctgtttcttggttaattgatattgagtaaggaaaaggttttctcaaactaaattctattgacatt...

Basic information

species Glycine max
transcript GLYMA18G49960.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G49960.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G15470.1 (Arabidopsis thaliana), 5'ss of exon 3
TCCTGATCTAAAGCTGCCGGATTCTTTTGATCAACTGGTTTCTGATATGAAGAACAATCAGTATGATGCAAAAACTTTTGCATTCATGCTAAGGGGAATGgtaagttgcttgtttcatttaacacgaagtgttgtctgtttcttggttaattgatattgagtaaggaaaaggttttctcaaactaaattctattg-acatt-
   || | | ||||| ||  ||||||||  |||||| ||||| ||||||||||| || || |||||||||||||| |||||  |  ||||  | |  |||||| | |  |||| | || | | |  |  | |  ||       |  |  | |   ||  |      |   | |||| |  |  || |   ||||   |||  
AGATGGTTTGAAGCTTCCAAATTCTTTTAGTCAACTTGTTTCCGATATGAAGAATAACCACTATGATGCAAAAACATTTGCTCTTGTGCTGCGAGCCATGgtacgct--ttgtctaatctgaaattatttctgatcctacatattatatacttgcatcaaaaggacatttgtttttgtttagttagaaaatattttgcatct

upper sequence: GLYMA18G49960.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G01040.2 (Arabidopsis thaliana), 5'ss of exon 3
TCCTGATCTAAAGCTGCCGGATTCTTTTGATCAACTGGTTTCTGATATGAAGAACAATCAGTATGATGCAAAAACTTTTGCATTCATGCTAAGGGGAATGgtaagttgcttgtttcatttaacacgaagtgttgtctgtttcttggtt---aattgatattgagtaaggaaaaggttttctcaaactaaattctattgacatt
   || | ||||||| || || ||||||  |||||||||||| |||||||||||||| || |||||||| ||||| |||||  || |  |  | |  ||||||  ||   |  |   || || |  |||  |    |||   ||| |    || | |||||   |  |  |    | || |  |||                 
AGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGgtacattctctaatc--ttcaata-aaagcttaaattgtagattgatccgaaacttatatttgatttg--attactctttttgaacag---------------

upper sequence: GLYMA18G49960.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0108g01520.t01 (Vitis vinifera), 5'ss of exon 3
TCCTGATCTAAAGCTGCCGGATTCTTTTGATCAACTGGTTTCTGATATGAAGAACAATCAGTATGATGCAAAAACTTTTGCATTCATGCTAAGGGGAATGgtaagttgcttgtttcatttaacacgaagtgttgtctgtttct-tggttaattgatattgagtaaggaaaaggttttctcaaactaaattctattgacatt-
   || ||||||||| || ||| | ||   |||||| |||||||| ||||||||||| |||||||||||||| || ||||| |||||| || ||| ||||||| ||| | | || |    | |||  | | |  | ||||| | |  ||   |||  ||      | ||     | |||     |||   || |  || || 
AGATGGTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTTCTGAAATGAAGAACAAACAGTATGATGCAAAGACATTTGCTTTCATGTTACGGGCAATGgtacgtttcatattac-cacagcacatattatattttgtttatctttttggatgaggtttgtcctgaaagttagtgtctttgtttaatggct-tatacttta