1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGCAAGGTGAAAATTGCAGAACATGTGTTGACTGGCCATAAGGTTGCGATCAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttgttttttataaataaatttcaatcctttttttaattttagatattccaatatttcctgcaattttgttttgttttgttttgtgaatattga...
species | Glycine max |
transcript | GLYMA18G49770.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGATCCTTAACCGACGCAAGATAAAGAGCATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTEST: gi|193471722|gb|FK434807.1|FK434807
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCT
EST: ATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCEST: gi|254315447|gb|GR825256.1|GR825256
genomic: ATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
EST: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCEST: gi|254336679|gb|GR842858.1|GR842858
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
EST: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAAGGTGAAAATTGCAGAACATGTGTTGACTGGCCATAAGGTTGCGATCAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttgttttttataaataaatttcaatcctttttttaattttagatattccaatatttcctgcaattttgttttgttttgttttgtgaatattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA