Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGAACCAGGAAAAGTGAACTGTTTCTGGCTGATGTCAACACCCAGTTGAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgtatatttgttagttatctgctcttttcaattgagatctgtacccccttgtttctgatttatgtgccatgtacagaattatcaatccaatttt...

Basic information

species Glycine max
transcript GLYMA18G49070.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193725524|gb|FK660616.1|FK660616
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTTATT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCT-ATT
EST: gi|9204535|gb|BE330759.1|BE330759
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|213611942|gb|DB964834.1|DB964834
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|58015357|gb|CX702099.1|CX702099
EST:     ACAGATTCT-ATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: ACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|192319809|gb|FK011905.1|FK011905
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|208308320|gb|GE109664.1|GE109664
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TACTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcT-CTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATT
EST: gi|13252098|gb|BG363001.1|BG363001
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|38192070|gb|CF921276.1|CF921276
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|18733680|gb|BM527751.1|BM527751
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|208096869|gb|GD894634.1|GD894634
EST:     AGAACAAAAAACAATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: AGAAC-AAAAAC-ATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|16347720|gb|BI973315.1|BI973315
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|20813195|gb|BQ297673.1|BQ297673
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|14516484|gb|BI095156.1|BI095156
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|193714422|gb|FK654993.1|FK654993
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|10845161|gb|BF068322.1|BF068322
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATNT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|5760695|gb|AI966058.1|AI966058
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|16347860|gb|BI973455.1|BI973455
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|6746954|gb|AW317410.1|AW317410
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|213611750|gb|DB960650.1|DB960650
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|207781546|gb|GD754363.1|GD754363
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGGTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|192314315|gb|FK007053.1|FK007053
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|193658831|gb|FK607276.1|FK607276
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|208101163|gb|GD900566.1|GD900566
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|19935870|gb|BQ080621.1|BQ080621
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|213614932|gb|DB957012.1|DB957012
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|120531919|gb|EH260052.1|EH260052
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|193667381|gb|FK611425.1|FK611425
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|16280918|gb|BI944216.1|BI944216
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|19935867|gb|BQ080620.1|BQ080620
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|12497297|gb|BG047496.1|BG047496
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCCCAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|209714837|gb|BW682002.1|BW682002
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|208109379|gb|GD901707.1|GD901707
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|8826174|gb|BE209834.1|BE209834
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|26047978|gb|CA784608.1|CA784608
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|298183076|gb|HO028339.1|HO028339
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|192322089|gb|FK012193.1|FK012193
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|15813385|gb|BI785660.1|BI785660
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|193571981|gb|FK532344.1|FK532344
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTG
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTG
EST: gi|192329954|gb|FK021540.1|FK021540
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTCGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
EST: gi|192314316|gb|FK007054.1|FK007054
EST:     GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATC                         TCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT
genomic: GAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgta ... gcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGGAACCAGGAAAAGTGAACTGTTTCTGGCTGATGTCAACACCCAGTTGAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATGtaagtttgtatatttgttagttatctgctcttttcaattgagatctgtacccccttgtttctgatttatgtgccatgtacagaattatcaatccaatttt

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccccc