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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAGAACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgtagtgtaatactctatttgctttgttgcttatggcttattctaaagtttgcaacttttctcaatgaagatgaccaactattttttatgttatgactgagttttatgctgatcaactgcatcagg

Basic information

species Glycine max
transcript GLYMA18G48280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 3
-ATACAGAACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtg-tagtgtaatactctatttgctttgttgcttatggcttattctaaagtttgcaacttttctcaatgaagatgaccaactattttttatgttatgac-tgagttttatgctgatcaactgcatcagg
  ||||||||||| |||||||| |||||||||||||| || ||||| ||||| ||||||        |  | || || |   |||  ||  |   || ||  | ||   |   ||| || || |||  |||  |  ||| |||  ||||| | | | ||  |   ||                         
AGTACAGAACTGTCTCTGGAGTCGCTGGGCCATTGGTTATCCTTGAGAAAGTCAAGgtattcctcacttatttagtatt---tttatttattcctttctgattcat---atgatttccatctgttcagaatctat-tgatcaatgattttctttctaattgcaccag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314147|gb|FK011519.1|FK011519
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
EST: gi|209723884|gb|BW675230.1|BW675230
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
EST: gi|15204687|gb|BI427455.1|BI427455
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
EST: gi|298165189|gb|HO011238.1|HO011238
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
EST: gi|213617560|gb|DB969272.1|DB969272
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
EST: gi|21676103|gb|BQ628454.1|BQ628454
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
EST: gi|213617292|gb|DB965191.1|DB965191
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
EST: gi|16995684|gb|BM085056.1|BM085056
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
EST: gi|21889121|gb|BQ742334.1|BQ742334
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
EST: gi|15815102|gb|BI787377.1|BI787377
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
EST: gi|21994280|gb|BQ785808.1|BQ785808
EST:     AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGG                         GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC
genomic: AACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGtaacgagtgt ... ctgcatcaggGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTC