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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGGAGAGTATGTTGTTCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatttttcatgttatatctcagaattgaaagttgtctgccaaagggtcattggatcagttgtagtgatgatgtagatgccgatctacagattttgtttgtgcaatattgttctttgaaatttcagttttgtgctgaatgttcagttttctgacttgcagg

Basic information

species Glycine max
transcript GLYMA18G46610.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13481736|gb|BG511079.1|BG511079
EST:     TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|192299097|gb|FG990411.1|FG990411
EST:     TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|7285538|gb|AW598025.1|AW598025
EST:     TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|192328575|gb|FK023565.1|FK023565
EST:     TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|12490017|gb|BG043538.1|BG043538
EST:     TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|254319562|gb|GR829074.1|GR829074
EST:     TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|17401910|gb|BM178692.1|BM178692
EST:     TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|192295537|gb|FG988111.1|FG988111
EST:     TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|19453234|gb|BM954644.1|BM954644
EST:     TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|11413618|gb|BF425629.1|BF425629
EST:     GGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: GGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|298178438|gb|HO024173.1|HO024173
EST:     TCGTGAGGGAGAACATGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
EST: gi|192298436|gb|FG988452.1|FG988452
EST:     TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGG                         CTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC
genomic: TCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatt ... gacttgcaggCTGAGGTTGTTGGCTCTGTCAATGCGGATGATGATAATCATCCAGAGTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCAGGAGAGTATGTTGTTCGTGAGGGAGAACGTGGGGACGGTCTTTACTTCATCTGGGAGGGAGAGGtatgcttatttttcatgttatatctcagaattgaaagttgtctgccaaagggtcattggatcagttgtagtgatgatgtagatgccgatctacagattttgtttgtgcaatattgttctttgaaatttcagttttgtgctgaatgttcagttttctgacttgcagg

- - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG