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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTACTGCACAGATACAATGTTTCTATCAAAGGAAAGAGGGCTGTTGTGATTGGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAGtaatatcacatttggccaaacttaaaattttagttaacagttcaaaactaattttatttcagttgctgttcactcattttcgcttcacatgtatatgattctacttctatgtgtctctgatgttactaga

Basic information

species Glycine max
transcript GLYMA18G46400.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192343|gb|HO036425.1|HO036425
EST:     GATTGGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAA                         GGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
genomic: GATTGGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAGtaatatcaca ... tgttactagaGGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
EST: gi|214005413|gb|DB988961.1|DB988961
EST:     CGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAA                         GGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
genomic: CGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAGtaatatcaca ... tgttactagaGGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
EST: gi|151411089|gb|EV280900.1|EV280900
EST:     GATTGGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAA                         GGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
genomic: GATTGGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAGtaatatcaca ... tgttactagaGGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
EST: gi|192307098|gb|FK002722.1|FK002722
EST:     GATTGGTCGGAGCAATATTGTTGGAATGCCGGCTGCTCTCTTGCTGCAAA                         GGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
genomic: GATTGGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAGtaatatcaca ... tgttactagaGGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
EST: gi|192331437|gb|FK019910.1|FK019910
EST:     GATTGGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAA                         GGGAAGATGCTACTGT
genomic: GATTGGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAGtaatatcaca ... tgttactagaGGGAAGATGCTACTGT
EST: gi|213602695|gb|DB978110.1|DB978110
EST:     GATTTCTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAA                         GGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
genomic: GATTGGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAGtaatatcaca ... tgttactagaGGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
EST: gi|9902082|gb|BE611050.1|BE611050
EST:     GGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAA                         GGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG
genomic: GGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAGtaatatcaca ... tgttactagaGGGAAGATGCTACTGTCAGTATTGTCCATTCTAGAACCAGTAACCCCGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCTACTGCACAGATACAATGTTTCTATCAAAGGAAAGAGGGCTGTTGTGATTGGTCGGAGCAATATTGTTGGAATGCCAGCTGCTCTCTTGCTGCAAGtaatatcacatttggccaaacttaaaattttagttaacagttcaaaactaattttatttcagttgctgttcactcattttcgcttcacatgtatatgattctacttctatgtgtctctgatgttactaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC