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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGTGAAGGTCATGTAGATGCTTGCATCACAGCCGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGtaagtgaccatcttcattgtattttctttatatttcatttcatctcttggcaatttattattttaaatatgatttatccatttgaatacagttcttgcat...

Basic information

species Glycine max
transcript GLYMA18G46230.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46230.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g35000.1 (Oryza sativa), 5'ss of exon 3
-AATAGTGAAGGTCATGTAGATGCTTGCATCACAGCCGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGtaagtgacc-atcttcattgtattttctttatatttcatttcatctcttggcaatttattattttaaatatgatttatccatttgaatacagttcttgcat
 |||| | |||| ||||||||||||||||||||  | |||||||| || |||||||||||||| ||     | |||||   | || |  | || |  || |||||      ||| | | | | |        |   |  |||  |   ||  |  | |||| | |  |||||| | |  | || |  |     || || || 
GAATAATCAAGGCCATGTAGATGCTTGCATCACTTCAGACAGTGACGCTTTCCTCTTTGGGGCTAAGACTGTCATAAAGGTTCTCCGATCGAATTGTAAGgtaagcagtttatcataaatatgtaactggattgaattgtttgcttcattttctctgtattctgt--aatatggtatcacgatgttcaccattttttttcag

upper sequence: GLYMA18G46230.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G004188_T01 (Zea mays), 5'ss of exon 3
-AATAGTGAAGGTCATGTAGATGCTTGCATCACAGCCGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGtaagtgaccatct-tcattgtattttctttatatttcatttcatctcttggcaattt--attattttaaatatgatttatccatttgaatacagttcttgcat
 |||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |||||| ||   | |  ||||     || |  | || | ||| |||||    | ||| |  || ||| | |     |  | ||||  | | ||  | || |  | || ||| || |  ||  |    | |  |              
GAATAGTGAAGGTCATGTAGATGCTTGCATCACTGCAGACAGTGATGCTTTCCTCTATGGGGCTAAGACCGTCGTAAAGGTCCTCAGATCGAATTGCAAGgtaaggactcctctgtagttctatgtccacagcaggtgatttgttttgttttccatgtgcaatagtttcaagaccatgaacttttcttcag-------------

upper sequence: GLYMA18G46230.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G069025_T01 (Zea mays), 5'ss of exon 3
-AATAGTGAAGGTCATGTAGATGCTTGCATCACAGCCGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGtaagtga-ccatcttcattgtattttctttatatttcatttcatctcttggcaatttattattttaaatatgatttatccatttgaatacagttcttgcat
 |||| |||||||||||||| |||||||||||| || ||||||||||| |||||||| ||||| ||     |  ||||     || |  | || | ||| ||||| |  |||   |  || ||| |||     |  |  |||    | ||  | || |   ||  ||  |      |||| | ||   | |||         
GAATAATGAAGGTCATGTAGGTGCTTGCATCACTGCAGACAGTGATGCTTTCCTCTTCGGGGCTAAGACTGTCGTAAAGGTCCTCAGATCAAATTGCAAGgtaagggctccactgtagttctatgttcacagcaggtgttttttattattttccatgtgcaatagta--tcaagactatcaacttttcttcag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193364378|gb|FK328883.1|FK328883
EST:     CTCTTTGGGGCCAACTGCATTATAAAAATGTTTCTGTCCCAACTTCAAAG                         AACCATTTGAATGCTACAATATGTCTGATATTGAAG
genomic: CTCTTTGGGGCCAACTGCATTATAAAA-TGTTTCTGTCCCAACTTCAAAGtaagtgacca ... tgcatgcaggAACCATTTGAATGCTACAATATGTCTGATATTGAAG
EST: gi|7684645|gb|AW755293.1|AW755293
EST:     CCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAG                         AACCATTTGAATGCTACAATATGTCTGATATTGAAGCTGGACTTGGATTGA
genomic: CCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGtaagtgacca ... tgcatgcaggAACCATTTGAATGCTACAATATGTCTGATATTGAAGCTGGACTTGGATTGA
EST: gi|193416136|gb|FK378030.1|FK378030
EST:     CCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAG                         AACCATTTGAATGACTACAATATAGTCTAGATATTGAAG
genomic: CCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGtaagtgacca ... tgcatgcaggAACCATTTGAATG-CTACAATAT-GTCT-GATATTGAAG