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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATATGGTTCCAAATTTTTGAGTAACGGGGAACCTGGTACTGCTCAGAATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttctttttactttccaagttttgaaacatgctttttcatcgattcattttttttttcttttttgtcatttgggcagtggcagttttttttaatc...

Basic information

species Glycine max
transcript GLYMA18G46140.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46140.3 (Glycine max), 5'ss of exon 3
lower sequence: AT1G01820.1 (Arabidopsis thaliana), 5'ss of exon 2
ACAATATGGTTCCAAATTTTTGAGTAACGGGGAACCTGGTACTGCTCAGAATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttctttttacttt-ccaagttttgaaacatgctttttcatcgattcattttt-----tttttcttttttgtcatttgggcagtggcagttttttttaatc
 |||||||||||||| || |||||| | ||  ||||||| |||||||| ||||||||||| |  |||||||||||  | ||||| |||||||| || |||||| | |||||  |  |||  |||  ||  || ||  ||||| | |  |  || | ||     | |    |   |  ||| ||      |   ||   ||      
TCAATATGGTTCCAAGTTCTTGAGTGATGGCCAACCTGGCACTGCTCAAAATGTCGACAAGAACACCAGCTTGGCTAGGAAAGTTTTCCGTCTCTTCAAGgttggtttcttcatcttttatcaaacttcaaatcacacttttacctgaaaccagtcttaagggtatgagctagctaacatctgttttaagttggtgactt------

upper sequence: GLYMA18G46140.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 2
ACAATATGGTTCCAAATTTTTGAGTAACGGGGAACCTGGTACTGCTCAGAATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttctttt-tactttccaagttttgaaacatgctttttcatcgattcattttttttttcttttttgtcatttgggcagtggcagttttttttaatc---
|||||||||||| |||||||||||| | ||  | ||||||||||| || ||||| |||||| |||||||||||||||| ||||| |||||||||||||||||| |||  |    ||| ||      | | |||| |   | |  ||  || | | | | | | | |   |  ||| |    |     | | | | |||  |   
ACAATATGGTTCGAAATTTTTGAGTGATGGACAGCCTGGTACTGCCCAAAATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgataccgtacattgtgg--tgtaaaactttgatctatatacatgcgtgtgtgtatacatacata-catatatatatatata-tatatattacccttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815736|gb|BI788011.1|BI788011
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|11412081|gb|BF424092.1|BF424092
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|15001018|gb|BI321832.1|BI321832
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|298169267|gb|HO020627.1|HO020627
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGCCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACGTGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|7926421|gb|AW832447.1|AW832447
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|58017723|gb|CX704465.1|CX704465
EST:     CGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: CGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|7284130|gb|AW596728.1|AW596728
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|23052758|gb|BU577249.1|BU577249
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|7691215|gb|AW759346.1|AW759346
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|13251950|gb|BG362853.1|BG362853
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|58023678|gb|CX710419.1|CX710419
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACNTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|7796633|gb|AW782030.1|AW782030
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|58014395|gb|CX701137.1|CX701137
EST:     CGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: CGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|6482692|gb|AW201929.1|AW201929
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|15663457|gb|BI700828.1|BI700828
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|209698252|gb|BW678023.1|BW678023
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|15814527|gb|BI786802.1|BI786802
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACATGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|151412092|gb|EV281904.1|EV281904
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|9564862|gb|BE474371.1|BE474371
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|58023559|gb|CX710300.1|CX710300
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|18725662|gb|BM523624.1|BM523624
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|27809248|gb|CB063670.1|CB063670
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|120530703|gb|EH258836.1|EH258836
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|4395943|gb|AI494940.1|AI494940
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
EST: gi|27446046|gb|CA953169.1|CA953169
EST:     ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC
genomic: ATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttct ... taattcgcagTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCC