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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaactctaagaacatttctccttttttttcatctttgtttgattttcctaatatcttgttgaatttttttttcag

Basic information

species Glycine max
transcript GLYMA18G46140.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4395943|gb|AI494940.1|AI494940
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|14992012|gb|BI317685.1|BI317685
EST:     CCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: CCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58019988|gb|CX706730.1|CX706730
EST:     ATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: ATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|13251950|gb|BG362853.1|BG362853
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|22523238|gb|BU082049.1|BU082049
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|15001018|gb|BI321832.1|BI321832
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7926421|gb|AW832447.1|AW832447
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58017723|gb|CX704465.1|CX704465
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|23052758|gb|BU577249.1|BU577249
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|27446046|gb|CA953169.1|CA953169
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7691215|gb|AW759346.1|AW759346
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|6482752|gb|AW201974.1|AW201974
EST:     TAAGTCCAACACCACAGGGCACTTCCCTCCCCCTAATTCTGTTGGGAAAG                         CCCA-GAATGCACTAACTCTC-ACTTTCTTGTTTCTTGATCAATTTGTGTG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTA-CTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTG
EST: gi|19347697|gb|BM892485.1|BM892485
EST:     CCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: CCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58023442|gb|CX710183.1|CX710183
EST:     CCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGGNT-GGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: CCAACACCACAGGGCACTCCCCTCCCCCTAATTCT-GTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|22523317|gb|BU082128.1|BU082128
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|27809248|gb|CB063670.1|CB063670
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7926211|gb|AW832237.1|AW832237
EST:     CCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: CCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|213607763|gb|DB959102.1|DB959102
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58023678|gb|CX710419.1|CX710419
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCNTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58014395|gb|CX701137.1|CX701137
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|192332474|gb|FK024235.1|FK024235
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|6482692|gb|AW201929.1|AW201929
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCT
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCT
EST: gi|15663457|gb|BI700828.1|BI700828
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|12689405|gb|BG155802.1|BG155802
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|209698252|gb|BW678023.1|BW678023
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCAC--CTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|15814527|gb|BI786802.1|BI786802
EST:     TAAGTCCAACACCACATGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|9564862|gb|BE474371.1|BE474371
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58023559|gb|CX710300.1|CX710300
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCNTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|22540711|gb|BU090554.1|BU090554
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|18725662|gb|BM523624.1|BM523624
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|15815736|gb|BI788011.1|BI788011
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7284130|gb|AW596728.1|AW596728
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|16348826|gb|BI974421.1|BI974421
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|13312697|gb|BG406348.1|BG406348
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|13562755|gb|BG550975.1|BG550975
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTAGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|13481238|gb|BG510581.1|BG510581
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|22540679|gb|BU090522.1|BU090522
EST:     TAAGTCCAACACCCCAAGGCACTCCCCTCCTCCTAATTTTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCC
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCC
EST: gi|151412092|gb|EV281904.1|EV281904
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|120530703|gb|EH258836.1|EH258836
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7796633|gb|AW782030.1|AW782030
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|15661823|gb|BI699194.1|BI699194
EST:     ACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: ACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG