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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATCCAAAAGTCTTTTCTAGTGCTGATACAGCATATGTCCTTGCATATTCTGTGATACTGCTTAATACCGATGCCCACAATCCTATGGTGAAAAACAAGgtgcagtctgtcaattctagaagttgattttcatatgattatgattatgattattatatatgtaatgaggttcttttttgtttgctgagttatgcag

Basic information

species Glycine max
transcript GLYMA18G45360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G45360.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 4
TAATCCAAAAGTCTTTTCTAGTGCTGATACAGCATATGTCCTTGCATATTCTGTGATACTGCTTAATACCGATGCCCACAATCCTATGGTGAAAAACAAGgtgcagtctgtcaattctagaagttgattttcatatgattatgattatgattattatatatgtaatgaggttcttttttg-tttgctgagttatgcag
 || ||||| | |||||| ||||| |||||||| ||||||||||| ||||| || ||| |||| || |||||||| || ||||| ||||| ||||| |||||      |||  ||  ||   | | | |||       || || | ||   ||  ||| |     |  |||||| || || | |  | | | ||||||
CAACCCAAAGGCCTTTTCCAGTGCAGATACAGCTTATGTCCTTGCTTATTCAGTCATAATGCTCAACACCGATGCACATAATCCAATGGTAAAAAATAAGgta-----tgt--atcttattggctaagttt-------ttgtg-taata--taccatagacagcctttggttctgttgtgatgtattaattaatgcag

upper sequence: GLYMA18G45360.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 4
TAATCCAAAAGTCTTTTCTAGTGCTGATACAGCATATGTCCTTGCATATTCTGTGATACTGCTTAATACCGATGCCCACAATCCTATGGTGAAAAACAAGgtgcagtctgtcaattctagaagttgattttcatatgattatgattatgattattatatatgtaatg--------aggttcttttttgtttgctgagttatgcag
|||||| || || ||| |||| || ||| |||| ||||| |||||||||||||||||  |||| ||||| ||||||||||| || |||||||| ||||||||    |   |  ||| |  | | | ||     |||  |     || |   ||  || |  || | |           || |||||| | |  ||    ||  ||
TAATCCTAAGGTGTTTACTAGCGCAGATTCAGCTTATGTTCTTGCATATTCTGTGATCATGCTCAATACTGATGCCCACAACCCCATGGTGAAGAACAAGgtttgcttcattcattgtctaggataatacagttattgtggaagttttaggtaaaatgttagtgacgttctttgtgcctttttttttttctcttggaacatatag

upper sequence: GLYMA18G45360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 4
TAATCCAAAAGTCTTTTCTAGTGCTGATACAGCATATGTCCTTGCATATTCTGTGATACTGCTTAATACCGATGCCCACAATCCTATGGTGAAAAACAAGgtgcagtctg----tcaattctagaagttgattttcatatgattatgattatgattattatatatgtaatga-ggttcttttttgtttgctgagttatgcag
||||||||| |  ||  ||||||| || ||||| ||||||||||| |||||||| ||  |||| ||||||||||| || || || ||||| || || |||||  | ||      | ||||  |     |||  |   ||  || || | | || | | | | | | || |     || ||||||| |   | |  |||||||
TAATCCAAAGGCTTTCACTAGTGCAGACACAGCCTATGTCCTTGCTTATTCTGTTATTATGCTGAATACCGATGCTCATAACCCGATGGTTAAGAATAAGgtatactcaaaaatttaatttgaagttatgagatgtttaatatcataact-tgctgaatttctgtttattattaatttttttttggtcattaaaatatgcag

upper sequence: GLYMA18G45360.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 5
TAATCCAAAAGTCTTTTCTAGTGCTGATACAGCATATGTCCTTGCATATTCTGTGATACTGCTTAATACCGATGCCCACAATCCTATGGTGAAAAACAAGgt--gcagtctgtcaattctagaagttgatt---ttcatatgattatgattatg---attattatatatgtaatgaggttcttttttgtttgctgagttatgcag
 ||||| || | |||   |||||| ||||||||||| || ||||| || ||||||||  ||||||| |||||||||||||| |||||||| ||||  |||||  | | | ||| |          |||  |   | |   ||  | ||  | ||   |||  | |     |  |   |||  | ||   ||| || ||||     
CAATCCGAAGGCCTTCAGTAGTGCAGATACAGCATACGTGCTTGCTTACTCTGTGATCATGCTTAACACCGATGCCCACAACCCTATGGTCAAAACTAAGgtcagtaatatgttagaatcgcgcattgcgtgagtacgggtgcgtgtgcgtgtgtgtattgctttgctcttggttctgttgctcttacattgttgcgtta-----