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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTGCTGATGGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaatttcaagagcctcttgatagttgatacatatgcatgtcatctcaatcgatgtcaatcatatttggtaattcatatgcataaactttattctatcaactcttttgcag

Basic information

species Glycine max
transcript GLYMA18G45270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G45270.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0048g00960.t01 (Vitis vinifera), 5'ss of exon 3
CTTGTGCTGATGGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaatttcaagagcctcttgatagttgatacatatgcatgtcatctcaatcgatgtcaatcatatttggtaattcatatgcataaact-ttattctatcaactcttttgcag
| |||||||||||||| || || ||||  |||||||| ||||||||||||||||| |||||||||||     | |     | ||||||  || ||   |   |   | |     |    ||  | |  | |||  |  | | |     |  ||| || ||||    | |||| |||||
CATGTGCTGATGGAGTGGTCAGGGTATACAAGTTGGACGATGCTTCAAGTAAAAGCTTCAAgtatgtatcactta-----cccttgatgttttatcagttaccgcctaacaaatactagtgatactatttttttttcttccttgcttctccactgtttttcttatgattcttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164303|gb|HO013948.1|HO013948
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTAAGGATTAATTTGCCAGCCGGTGGTCATCAAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
EST: gi|192296388|gb|FG989092.1|FG989092
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
EST: gi|298182408|gb|HO026583.1|HO026583
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTAAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
EST: gi|192295611|gb|FG990465.1|FG990465
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
EST: gi|209725596|gb|BW677898.1|BW677898
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTAAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
EST: gi|213593130|gb|DB966067.1|DB966067
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTAAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT