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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctgaactgaaaaagtgtatcaattttggagagtttaccacaatgaaaatttcctttaatagctaatatttaatttggaacataaaataatatt...

Basic information

species Glycine max
transcript GLYMA18G43000.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120534630|gb|EH262763.1|EH262763
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|6134179|gb|AW132572.1|AW132572
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|26047871|gb|CA784524.1|CA784524
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|193683072|gb|FK621006.1|FK621006
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|151398007|gb|EV267885.1|EV267885
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|120495967|gb|EH224134.1|EH224134
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|193494808|gb|FK460598.1|FK460598
EST:     CTTTTACACTGGTCCCTACTAGTT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAG
genomic: CTTTTACACTGGTCCC-AC-AG-Gtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAG
EST: gi|193568402|gb|FK522597.1|FK522597
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|9205154|gb|BE331378.1|BE331378
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|213601451|gb|DB968739.1|DB968739
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|207770812|gb|GD743364.1|GD743364
EST:     CACAGAACAAGTTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CACAGAGCAAG-TTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|20449496|gb|BQ253620.1|BQ253620
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|193682922|gb|FK625070.1|FK625070
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|213618087|gb|DB963720.1|DB963720
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|120495266|gb|EH223433.1|EH223433
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|209705809|gb|BW661477.1|BW661477
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
EST: gi|193483192|gb|FK451035.1|FK451035
EST:     CAAGTTGCCTTTTACACTGGTCCCACAGT                         CGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC
genomic: CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctg ... caattacagtCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGTTGCCTTTTACACTGGTCCCACAGGtacgaatctgaactgaaaaagtgtatcaattttggagagtttaccacaatgaaaatttcctttaatagctaatatttaatttggaacataaaataatatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaagt