Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTATGTTTTGGTTGAGAAATTTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatatttttgtccatcctttaccaagtattgtactctttactttaagaattaaatttgcatttatatgccatattttccttttttatatgatgtctgga...

Basic information

species Glycine max
transcript GLYMA18G42910.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208251345|gb|GE050552.1|GE050552
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCCAAATCACAAGGAGACACA
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACA
EST: gi|193626486|gb|FK574390.1|FK574390
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|193330737|gb|FK296229.1|FK296229
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGAC
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGAC
EST: gi|208209163|gb|GE003545.1|GE003545
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|193541412|gb|FK495258.1|FK495258
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGG
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGG
EST: gi|193545806|gb|FK501289.1|FK501289
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGNTGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|207690690|gb|GD672468.1|GD672468
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|208275350|gb|GE075618.1|GE075618
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|192297913|gb|FG988369.1|FG988369
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCCTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|207813993|gb|GD785886.1|GD785886
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAG
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAG
EST: gi|193405373|gb|FK371350.1|FK371350
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAGGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|151410357|gb|EV280172.1|EV280172
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|208222954|gb|GE021287.1|GE021287
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTT-CGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|207845059|gb|GD815342.1|GD815342
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAG
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAG
EST: gi|193334574|gb|FK298896.1|FK298896
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCC-TCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|193395028|gb|FK360447.1|FK360447
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|207709989|gb|GD690673.1|GD690673
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
EST: gi|193605468|gb|FK558196.1|FK558196
EST:     TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACA
genomic: TTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACA
EST: gi|193719877|gb|FK650429.1|FK650429
EST:     CCTTAGGAATTACAAG-TTTCACATGGCGATGTGGTGGTCTTTCGC                         TCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT
genomic: CCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatattttt ... cttctgtagcTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACTATGTTTTGGTTGAGAAATTTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGGtaatatttttgtccatcctttaccaagtattgtactctttactttaagaattaaatttgcatttatatgccatattttccttttttatatgatgtctgga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG