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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTGTGAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTGCCCAGGCGTTACTCTGGATCATTAAATGCTTATTCAACAATTGTGAGACAggtatttgcatataacttgatatgatttgagaaaatgggaagatgtattcagtccttttcaggttataatagttatgttcaatctgcatcctaaacaca

Basic information

species Glycine max
transcript GLYMA18G42220.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G42220.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 4
ATCTTGTGAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTGCCCAGGCGTTACTCTGGATCATTAAATGCTTATTCAACAATTGTGAGACAggta------tttgcatataacttgatatgatttgagaaaatgggaa-gatgtattcagtccttttcaggttataatagttatgt-------tcaatctgcatcctaaacaca-
  |||||||||||| |||||||| | ||||||||||| || ||||||||||| || || || || |||||||| ||||||||||| ||||| |||||||||||        ||||   ||  |  |||| ||||   |   |    |  || |||| |    |  |  | ||    |  ||||           ||| || |||  |||   | 
-CCTTGTGAAAGTTCGACTTCAATCTGAAGGAAAATTGCCACCTGGTGTGCCAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406060|gb|EV275875.1|EV275875
EST:     CCCAGGCGTTACTCTGGATCATTAAATGCTTATTCAACAATTGTGAGACA                         GGAAGGAGTTGGAGCACTTTGGACTGGGATTGGTCCCAACATAGCAAGAAA
genomic: CCCAGGCGTTACTCTGGATCATTAAATGCTTATTCAACAATTGTGAGACAggtatttgca ... cctaaacacaGGAAGGAGTTGGAGCACTTTGGACTGGGATTGGTCCCAACATAGCAAGAAA
EST: gi|151412188|gb|EV282000.1|EV282000
EST:     CCCAGGCGTTACTCTGGATCATTAAATACTTATTCAACAATTGTGAGACA                         GGAAGGAGTTGGAGCACTTTGGACTGGGATTGGTCCCAACATAGCAAGAAA
genomic: CCCAGGCGTTACTCTGGATCATTAAATGCTTATTCAACAATTGTGAGACAggtatttgca ... cctaaacacaGGAAGGAGTTGGAGCACTTTGGACTGGGATTGGTCCCAACATAGCAAGAAA