1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTAGTGTAAAGGACATATGCAAGGATGGCGGTATATTTAAGAAGATAATTACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGGtatatatatgtctcatttaattctgtttatgtgatgtctgtgttaattatccaagtcttaactatttgttgtacttgttgcgggtaatgcagt
species | Glycine max |
transcript | GLYMA18G32830.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGT TAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGAEST: gi|209701554|gb|BW655856.1|BW655856
genomic: ACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGGtatatatatg ... gtaatgcagtTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGA
EST: ACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGT TAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGATGGEST: gi|298183231|gb|HO028216.1|HO028216
genomic: ACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGGtatatatatg ... gtaatgcagtTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGATGG
EST: AAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGT TAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGATGGEST: gi|207717191|gb|GD697685.1|GD697685
genomic: AAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGGtatatatatg ... gtaatgcagtTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGATGG
EST: ACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGT TAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGATGGEST: gi|9986256|gb|BE660364.1|BE660364
genomic: ACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGGtatatatatg ... gtaatgcagtTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGATGG
EST: ACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGG TAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGATGGEST: gi|213588372|gb|DB967858.1|DB967858
genomic: ACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGGtatatatatg ... gtaatgcagtTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGATGG
EST: CTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATNGA-GTATTGGT TAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTG
genomic: CTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGAT-GAAGTATTGGGtatatatatg ... gtaatgcagtTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGTGTAAAGGACATATGCAAGGATGGCGGTATATTTAAGAAGATAATTACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGGtatatatatgtctcatttaattctgtttatgtgatgtctgtgttaattatccaagtcttaactatttgttgtacttgttgcgggtaatgcagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA