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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttcaacctatatgttcggcttagttctgtgccctttttatattttaatctttttaaatcaaatccattt...

Basic information

species Glycine max
transcript GLYMA18G26190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttcaacctatatgttcggcttagttctgtgccctttttatattttaatctttttaaatcaaatccattt
|||||||||||||| || |  || ||||||||||| || || ||||| ||||| ||||||||||| ||| |||| ||||| || ||| | |||||||||||||  | |  ||| |  | || || ||    |||     ||||    | | | | ||||  |       ||||| |  |  || ||   ||         
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaag--gctctatttctattattgactttcgg---atattcatgcccttgctctgacc-------atattatgttacttgtatggcag--------

upper sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 4
---------GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttcaacctatatgttcggcttagttctgtgccctttttatattttaatctttttaaatcaaatccattt
         || ||||||||||| || |  || || |||||||||||||| ||||| ||||| || ||||| || ||| |||||||||| || ||| |||| ||||| |||||    |||  |  ||     || |  |                                                                      
GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggtcgtgtccgccttctgctccacagaggtata---tagactgtatctccattgtactc---------------------------------------------------------------------

upper sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttcaacctatatgttcggcttagttctgtgccctttttatattttaatctttttaaatcaaatccattt
|| ||||||||||| || |  || || |||||||||||||| ||||| ||||| || ||||| || ||| |||||||||| || ||| |||| ||||| ||||| ||  |   |   | | || |  | |   || ||  | | ||     | |||||   |      | |  | | |  | | ||              
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtat-atagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag-------------

upper sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttcaacctatatgttcggcttagttctgtgccctttttatattttaatctttttaaatcaaatccattt-
|| ||||||||||| || |  || || |||||||| ||||| ||||| ||||| || |||||  | ||| ||||||||||||| ||| |||| || ||||||||   | |  |   ||      | |  | |     | || | ||   || | |  | |       ||  || | |||  | |     |       ||  
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagag-acttcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagggactccctgcttcc

upper sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttcaacctatatgttcggcttagttctgtgccctttttatattttaatctttttaaatcaaatccattt
|| ||||||||||| || |  || || |||||||| ||||| ||||| ||||| || |||||  | ||| ||||||||||||| ||| |||| || ||||||||   |                 ||  | || |   | ||   || ||    |  | | | ||  || |  | | | | ||  | ||||| ||  |  
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagaga---------------cttcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtag

upper sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttcaacctatatgttcggcttagttctgtgccctttttatattttaatctttttaaatcaaatccattt
|| ||||||||||| || |  || || |||||||| ||||| ||||| ||||| || |||||  | ||| ||||||||||||| ||| |||| || ||||||||   |               ||  | ||| ||   | ||   ||  |    |  | | | ||  || |  | | | | ||  | ||||| ||  |  
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagaga-------------cttcctatgtccag--tgtactctcaacaccatcttttactctgattcttatctgaacattcgatatcaattctgtag

upper sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttcaacctatatgttcggc-ttagttctgtgccctttttatattt-taatctttttaaatcaaatccattt
|| || || ||||| || |  ||||| |||||||| ||||| ||||| |||||||| ||||| || ||||| || ||||| || |||||||||||| | ||||  |  |  |        |  |    || | || | | | | ||   | ||| |  | ||   ||||||| | | | ||||  ||  ||    |  |   
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagatt-ccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggtt--attgtgtttag--

upper sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgta-------tgatgtagctttgatgcttttttttttgtt-caacctatatgttcggcttagttctgtgccctttttatattttaatctttttaaa--tcaaatccattt------
|||||||| ||||| || |  || ||||||||||| ||||| || || ||||| |||||||| || |||||||| |||||| | ||||||||||| ||||||        ||     | | | || |||      |  |  |||||  || ||||    || || | |||   ||   | | | |   || ||| |  | |     ||||      
GGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGCTTCATAGGGgtgagtaaactgggactgttctaatccttaaaaactgatcacaacccttaagttca---tatttttatgcaagttgggtctatgagatttattacactttatgcttatttgagcag

upper sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttc-aacc--tatatgttcggcttagttctgtgccctttttatattttaatctttttaaatcaaatccattt-------------------------------------------------------
|||||||| |||||||| |  ||||| |||||||| ||||| ||||| ||||| ||||||||| | ||||||||||||||| | || ||||| || || |||  | | | | |   ||  |  | ||  ||  |  |||   ||   |||   ||     ||   |      |  ||  || | | ||     |   |||| |                                                       
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggcca-gttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699698|gb|BW652083.1|BW652083
EST:     GAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
genomic: GAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
EST: gi|6482119|gb|AW201390.1|AW201390
EST:     GAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
genomic: GAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
EST: gi|6667651|gb|AW279102.1|AW279102
EST:     GCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
genomic: GCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
EST: gi|19053288|gb|BM731955.1|BM731955
EST:     GTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
genomic: GTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
EST: gi|308097910|gb|HO761081.1|HO761081
EST:     GAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
genomic: GAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
EST: gi|192296729|gb|FG991297.1|FG991297
EST:     GAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
genomic: GAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
EST: gi|298187174|gb|HO034323.1|HO034323
EST:     GAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA
genomic: GAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAA