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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCAAACATCTCTGTTGGTGCTTCTGGTGCACTTTTCGGCTTGCTGGGAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGGtgcttaataaatttctcatttgcaactgagtgtttcaaaaggaaagatcatgcttttaaaagcaacctactgacaatcaagattttcttttcatgtgaagc

Basic information

species Glycine max
transcript GLYMA18G25760.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G25760.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g00470.t01 (Vitis vinifera), 5'ss of exon 3
-CAGTCAAACATCTCTGTTGGTGCTTCTGGTGCACTTTTCGGCTTGCTGGGAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGGtgcttaataaatttctcatttgcaactgagtgtttcaaaaggaaagatcatgcttttaaaagcaaccta-ctgacaatcaagattttcttttcatgtgaagc
 |||   ||||||||||||||||| || |||||||| || || || || |||||||||||||| || ||||||||||| ||||| ||||||| ||| ||||| |||| | | |   ||       ||| | |  |  |     |   |   |  ||||  || |    || || |||||  |     | | ||||        
CCAGGAGAACATCTCTGTTGGTGCCTCCGGTGCACTCTTTGGATTACTTGGAGGCATGCTTTCTGAGCTCATTACTAATTGGTCAATATATGCTAATAAGgtactta-tgagtggttctcagatgacttaatcgtgaatctctagctagttttatttttgaacccgtttatcttacaatttattgagtgtgttcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325246|gb|FK019132.1|FK019132
EST:     AGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGC                         TAGCAGCACTCCTCACCCTTGTGATCATCAT
genomic: AGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGGtgcttaataa ... catgtgaagcTAGCAGCACTCCTCACCCTTGTGATCATCAT
EST: gi|193535672|gb|FK493518.1|FK493518
EST:     AGGCATGCTTTCAGAACTCATTACTAACTGGTCTGTATATGATAACAAGC                         TAGCAGCACTCCTCACCCTTGTGATCATCA
genomic: AGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGGtgcttaataa ... catgtgaagcTAGCAGCACTCCTCACCCTTGTGATCATCA
EST: gi|298165603|gb|HO011652.1|HO011652
EST:     AGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGC                         TAGCAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTTG
genomic: AGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGGtgcttaataa ... catgtgaagcTAGCAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTTG