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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCTCACAAAACTTCACGAACAAGGACGAGAACCTATTCCTCCAGTAGGGATCATACCACTTGGTACAGGCAATGACTTGTCTAGGAGTTTTGGTTGGgtaaattcgcatgcttggaaattgtgtgttaaatgaatgttgattataatgtcaaataatatttacttttaatctatttggtattaccag

Basic information

species Glycine max
transcript GLYMA18G22380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G22380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0052g01840.t01 (Vitis vinifera), 5'ss of exon 3
ATGTCTCACAAAACTTCACGAACAAGGACGAGAACCTATTCCTCCAGTAGGGATCATACCACTTGGTACAGGCAATGACTTGTCTAGGAGTTTTGGTTGGgtaaattcgcatgcttggaaattgtgtgttaaatgaatgttgattataatgtcaaataatatttacttt-taatctatttggtattaccag
  ||||   | | ||| || ||||    || |||||  ||||||| || || || || ||||| || ||||||||||| |||||||||||||||||||||||||  |    |   || |       |   |  |   |      | ||   |||||   | |    | | |  |   ||  |         
TAGTCTTGGAGAGCTTGACAAACAGAATCGTGAACCAGTTCCTCCTGTTGGAATTATTCCACTCGGAACAGGCAATGATTTGTCTAGGAGTTTTGGTTGGgtaagctt-tttctctgcatccaacattccagttttcttaatgatgtatcttcaaaagctgtcctttgtatgcttccttcag---------