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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGTGATAGAGAGATGATCTTTGCAAAGTTCAGAAGATGGTGGAAAGGTGTAAATATTTTTCAGAAGGCTTATGTTTTGATTCCAATACATGAGGAgtaagttttcttgttagcgttgaacttttgtttgtaaatgataattcttgtaaatggtgagaagttctttttgtgctttcctttgaattaggtcattatc...

Basic information

species Glycine max
transcript GLYMA18G18950.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G18950.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G174667_T01 (Zea mays), 5'ss of exon 1
CAAAGT---GATAGAGAGATGATCTTTGCAAAGTTCAGAAGATGGTGGAAAGGTGTAAATATTTTTCAGAAGGCTTATGTTTTGATTCCAATACATGAGGAgtaagtt--ttcttgttagcgttgaacttttgtttgtaaa----tgata-attcttgtaaatggtgagaagttctttttgtgctttcctttgaattaggtcattatc
|||| |    ||     |||||  | | ||||||| |||||||||||||||||||| ||||| ||  | || || ||  |  |  | || || |||| |  ||||||   | || | ||  | | |    ||     |||     ||| | |  ||| || ||| | |  |  ||  |||||        |  |  | | |||     
CAAAATTTATATTTCAGGATGAGTTCT-CAAAGTTGAGAAGATGGTGGAAAGGTGTCAATATATTAAATAAAGCATACATAATCTTGCCGATCCATGGGATgtaagtcaatactggataaggataagacatttacaataagaagctgaaatacacttttatatgtttaagacatcagtttgttagcaagctcca--tggttca-----

upper sequence: GLYMA18G18950.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g00090.t01 (Vitis vinifera), 5'ss of exon 2
CAAAGTGATAGAGAGATGATCTTTGCAAAGTTCAGAAGATGGTGGAAAGGTGTAAATATTTTTCAGAAGGCTTATGTTTTGATTCCAATACATGAGGAgtaagttttct-tgttagcgttgaacttttgtttg--taaatgataattcttgtaaatggtgagaagttctttttgtgctttcctttgaattaggtcattatc
   ||||| |  || |     |||   ||||| ||||| |||||||| ||||||||||| ||||||||||| ||| || |  ||||||||||| | ||||||||| | | |  |      | | || ||  ||  |||||   |  |  ||  ||  || | |  |      |||      | ||| | |||   ||    
GGGAGTGACAAGGAAACTTCTTTTATTAAGTTTAGAAGGTGGTGGAAGGGTGTAAATATATTTCAGAAGGCATATATTCTTCTTCCAATACATCAAGAgtaagttctttctaatgattcagcagttctgcatgagtaaataccatattatgctaagagtcacatttagggcatgtttggaacgttggaatagagaatg---