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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCTGGGTTGCTCGTAGACCACCAGGATATGCATTTATTGAGTTTGATGATCGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATggtaagtatgcattactattttatcaatctgtcattatttatccgtgtttgccatccatgttaagcaattgcccttgtgcctttttttttttttgcattttctaaattttgtattagcattgatgtttgggtttcgtata

Basic information

species Glycine max
transcript GLYMA18G18860.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G18860.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g00250.t01 (Vitis vinifera), 5'ss of exon 2
GTGTCTGGGTTGCTCGTAGACCACCAGGATATGCATTTATTGAGTTTGATGATCGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATggtaagtatgcattactattttatca-atctgtcattatttatccgtgtttgccatccatgttaagcaattgcccttgtgcctttttttttttttgcattttctaaattttgtattagcattgatgtttgggtttcgtata
 ||| ||||||||||| |||||||| || ||||| ||| ||||||||| |||||| ||||||||  | ||||||||||  |  ||||||||| ||||   |  | | |   |  | |  |||||  |    |  ||   |    | ||| ||  |    | |   |||   | | || ||||||   ||||| |                                    
-TGTTTGGGTTGCTCGGAGACCACCGGGTTATGCTTTTGTTGAGTTTGCTGATCGTAGGGATGCTGTAGATGCAATTCGTGGATTGGATGgtgagtacaaagcattttccaaatataaatgtcaagaaagtttggttcat----tgcatattttgttgatcctactgtttttatcttctttttttttttttcca------------------------------------