1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TACATTTGCTGTATGGTCTGAGAGCTGCTCTTGATCTGATTTTTGAGGAAGGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAGgtaaggcaagatttgcttgttcaaaaatcatagttaaggacttaacatgtaaaagacgattttaatttctatgcactgatagtataaatctttttacact...
species | Glycine max |
transcript | GLYMA18G14740.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAG ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGEST: gi|105637492|gb|DY577144.1|DY577144
genomic: GGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAGgtaaggcaag ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: GGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAG ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGEST: gi|192312356|gb|FK005360.1|FK005360
genomic: GGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAGgtaaggcaag ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: GGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAG ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGEST: gi|5607145|gb|AI901243.1|AI901243
genomic: GGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAGgtaaggcaag ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: CGACTCGANAATGTGATTGCAAGACACAGTCGTCTATGCAAAGCAACCAG ACTTGCTGTAGAGGCATGGEST: gi|7795420|gb|AW780745.1|AW780745
genomic: GGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAGgtaaggcaag ... ctaaatgcagACTTGCTGTAGAGGCATGG
EST: GGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAG ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGEST: gi|120533482|gb|EH261615.1|EH261615
genomic: GGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAGgtaaggcaag ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: GGACTTGAAAATGTGATTGCCAGACACAGTCGTTTAGGCAAAGCAACCAG ACTTGCTGTAGAGGCCTGGGGTTTGAAGAATT
genomic: GGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAGgtaaggcaag ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACATTTGCTGTATGGTCTGAGAGCTGCTCTTGATCTGATTTTTGAGGAAGGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAGgtaaggcaagatttgcttgttcaaaaatcatagttaaggacttaacatgtaaaagacgattttaatttctatgcactgatagtataaatctttttacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaga