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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGACACTTATGGTGTGTTTGCAGACCCTGTTGATCCAGAAGAGgtgtgtcgaattatttttcctgtgagttgttaatcttgcttttggaagacacctgagttggaagtttaaattctgtttttgacatgtag

Basic information

species Glycine max
transcript GLYMA18G10890.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10890.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G55040.2 (Arabidopsis thaliana), 5'ss of exon 4
GAAAGACACTTATGGTGTGTTTGCAGACCCTGTTGATCCAGAAGAGgtg-tgtcgaattatttttcctgtgagttgttaatcttgcttttgga--agacacctgagttggaagtttaaattctgtttttgacatgtag------
||||||||  |||||||||| |||||| ||||||||||| ||||||||  ||  | |||   |    |      ||   |   || |     |  |||    | || ||     ||  ||| |  ||| |   ||||       
GAAAGACATCTATGGTGTGTATGCAGAACCTGTTGATCCTGAAGAGgtaatggtggatttcctggagttatctctgaccaatctgttccgaaattagagttttaagctgttttatttgatttttctttgggattgtatttgcag