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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgacttattgtgttcagtattttactgtgacatttattttatttgttagtgaattgcttcattatatgactgccatattctagatcaccaaact...

Basic information

species Glycine max
transcript GLYMA18G10400.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g52340.1 (Oryza sativa), 5'ss of exon 4
GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgacttattgtgttcagtattt-tactgtgacatttattttat--ttgttagtgaat--tgcttcattatatgactgccata---ttctagatcaccaaact---------------------------------------------------------------
||||| || ||||| ||| |||  |||||||| ||||   |  | || |    |||||||||||| |||||||| ||||| |||||||||||       |||||    |   |   |  | |||  | | || | || |  ||| | |    |  || |  ||| ||     |  ||    || |   | ||| || |                                                               
GAAATTGTGTCAATCTACTCTGCACTTTCACCCCCAACATTGTCACCAGGTGCATCGAACCGAGTCTGCAATGCACTTGCACTTCTTCAGgtacataatcttatgaaatagggcggtaatgctggaaaagttgtcttctggttgcttgcatttcatgatgtattttacagtagaaattgccttttgagttacccaagttggatttatgacatagatttgctgattaactctttcttttttgcttttcaaaaataatttcag

upper sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgt-cagatg-acttattgtgttcagtattttactgtgacatttattttatttgttagtgaattgcttcattatatgactgcc-atattctagatcaccaaact---------
|| || || ||||| ||| |||||||| |||| |||||||| |||||||| || || ||||| || |||||  | || |||||||||||||| || ||| |  | | || |||    ||    |||   ||||  | |   | |   |   |   | ||| | ||  ||    || ||||   |        |         
GAGATTGTATCAATCTACTCTGTTCTTGCACCTCCAAATCTGACTCCTGCTCAGTCCAACCGTGTTTGCAACTCGCTCGCTCTTCTTCAGgttcacatggagatttcgtcttcttatttaggatgttttatttcatgttcatatattttgctgaatccatcagatttctaatgattttctgtcttgttgttttactctgcag

upper sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 5
GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgacttattgtgttcagtattttactgtgacatttattttatttgttagtgaattgctt-cattatatgactgccatattctagatcaccaaact--
|| ||||||||||| || |||||||| |||||||||||||| ||||| |||||||| || || || |||||||| ||||| ||||| ||||||| ||   || |  | || |||    |  | |  ||||   ||| |     |   | || | | |||| |||   ||    | |    ||    ||     
GAGATAGTTTCAATTTATCCTGTTCTATCACCACCAAATCTAACTCCAGCACAATCAAATCGGGTCTGCAATGCACTTGCCCTTCTCCAGgtcaaatattttttcttattaagttccctgttatagcatt---tttgtcaaaaaaaaatttccatacattttatttatgttgcacttgtcattgtaaagtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105005|gb|BI892745.1|BI892745
EST:     TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|4290433|gb|AI438073.1|AI438073
EST:     TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|27426250|gb|CA937770.1|CA937770
EST:     CTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: CTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|20075320|gb|BQ094111.1|BQ094111
EST:     TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|209707752|gb|BW683644.1|BW683644
EST:     TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|15816131|gb|BI788406.1|BI788406
EST:     TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|19053276|gb|BM731943.1|BM731943
EST:     TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCGAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|23057145|gb|BU577861.1|BU577861
EST:     TACTCCTGCACAATCCGA-CCGAGTATGCCATGCTCTTGCTCCTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAG
genomic: TACTCCTGCACAATC-GAACCGAGTATGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAG