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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAATGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaatcttcatttttatggatatttacctgcttcactctttctctggtttaattgttgaaagattgtattaca

Basic information

species Glycine max
transcript GLYMA18G08370.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08370.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G014313_T02 (Zea mays), 5'ss of exon 5
GCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAATGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggta--------atcttcatttttatggatat---ttacctgcttcactctttctctgg----tttaattgttgaaagattg-tattaca-----
 | || || |||||||||||||| ||||| || |||  |||||| || ||||| || ||||| ||||| || ||||| |||||||| || || || || |||||        || || |  ||||||   ||   ||||||   |          || |    | ||| | |  || |  || | ||||      
-CAAAAATCCCCTTTCCATTGACTCAGAGATTCAGGGGAATGCTGCAAAATGGGATTGACCTGAGCACTGTTGATGTCAGCTATGTTAGTAGCCGGTCATGgtatgtataaaatatttacctttatgtcaatgaattaccttgatggtatagcgactaggatctctaaatctctaatgtctgctgttaccgatag

upper sequence: GLYMA18G08370.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G12590.1 (Arabidopsis thaliana), 5'ss of exon 5
GCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAATGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaa-tcttcatttt---tatggatatttacctgcttcactctttctctggttt--aat-tgttgaaagattgtattaca------------------------------------------------------
 |||| ||||| |||||| |||| |||||||| || |||||| |||||||||| || ||| | ||||| || |||||||||||||| || ||||| || |||||| |  |||  ||    |  |   |||   |  | |  || |  || | |||  | | || | |     | |  | |                                                       
-CCAAAATACCATTTCCACTGACTCAGAGGTTCAGATCAATGTTACAGAATGGCATTGACTTGAGCACTGTCGATGTTAGCTATGTGAGTAGTCGTTCCTGgtaagtactcaaattacacaaaggactttgtgttatccggtcctcttcagattttcagtatgctaatcatatttgcttctggatatttgccctttctcttttttttttttatgagtttttctttcgctcttcag

upper sequence: GLYMA18G08370.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0187g00170.t01 (Vitis vinifera), 5'ss of exon 5
GCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAATGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaat--cttcatttttatggatatttacctgcttcactc--tttctctggtttaattgttgaaagattgtattaca---------------------------------------------------
 |||||||||| || || ||||| ||||||||| | || ||| |||| |||||||| ||  | ||||| ||||||||||||||||||||||||||||| ||||| |  ||| || |  |     |   | ||  | |   |    | ||   | |  |  ||  ||  |  |||||                                                     
-CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgcttaatatcaagaacaagaaagctattacttccagcctgtcaaatcttttgctttgaatttgatattaacctttagaacactgggctgaatgtcttctaatttgctgtaatcttttatcag

upper sequence: GLYMA18G08370.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0187g00220.t01 (Vitis vinifera), 5'ss of exon 5
GCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAATGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaat--cttcatttttatggatatttacctgcttcactc--tttctctggtttaattgttgaaagattgtattaca---------------------------------------------------
 |||||||||| || || ||||| ||||||||| | || ||| |||| |||||||| ||  | ||||| ||||||||||||||||||||||||||||| ||||| |  ||| || |  |     |   | ||  | |   |    | ||   | |  |  ||  ||  |  |||||                                                     
-CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATGgtacttgcttaatatcaagaacaagaaagctattacttccagcctatcaaatcttttgctttgaatttgatattaacctttagaacactgggctgaatgtcttctaatttgctgtaatcttttatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018272|gb|CX705014.1|CX705014
EST:     TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTT                         GGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
genomic: TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaatcttc ... ttgtattacaGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
EST: gi|214008165|gb|DB987056.1|DB987056
EST:     ATGTCAGCAGTCGCTCTT                         GGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
genomic: ATGTCAGCAGTCGCTCTTggtaatcttc ... ttgtattacaGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
EST: gi|208307969|gb|GE105449.1|GE105449
EST:     TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTT                         GGTGCTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
genomic: TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaatcttc ... ttgtattacaGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
EST: gi|209715079|gb|BW677122.1|BW677122
EST:     TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTT                         GGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
genomic: TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaatcttc ... ttgtattacaGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
EST: gi|17518879|gb|BM187921.1|BM187921
EST:     TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTT                         GGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
genomic: TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaatcttc ... ttgtattacaGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
EST: gi|209729539|gb|BW651866.1|BW651866
EST:     TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTT                         GGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
genomic: TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaatcttc ... ttgtattacaGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
EST: gi|151400645|gb|EV270459.1|EV270459
EST:     TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGTTCTT                         GGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG
genomic: TGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTTggtaatcttc ... ttgtattacaGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGG