Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCTATTTGCTTATTTCCTGTGTACCCTCATCGCTGCAAGCTATTGATACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGAgtaagtttttctttcctttaatatttgattgtttttgcctagtttcttcatgtagttttaattagcctttgataggttgcatgagtatggctttggtact...

Basic information

species Glycine max
transcript GLYMA18G07900.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796292|gb|AW781689.1|AW781689
EST:     ACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGA                         TAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
genomic: ACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGAgtaagttttt ... aatattgtagTAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
EST: gi|193412504|gb|FK379527.1|FK379527
EST:     ACTTTACTCATGCGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGA                         TAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
genomic: ACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGAgtaagttttt ... aatattgtagTAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
EST: gi|14259132|gb|BG882040.1|BG882040
EST:     ACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGA                         TAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
genomic: ACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGAgtaagttttt ... aatattgtagTAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
EST: gi|7796768|gb|AW782162.1|AW782162
EST:     ACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGA                         TAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
genomic: ACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGAgtaagttttt ... aatattgtagTAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
EST: gi|151396851|gb|EV266724.1|EV266724
EST:     CTT-ACTCATGTGCTGGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGA                         TAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
genomic: CTTTACTCATGTGCTGGG-ATCCTTTTCCTCATTCTCTCTCTACTTTTGAgtaagttttt ... aatattgtagTAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
EST: gi|193683870|gb|FK621412.1|FK621412
EST:     ACTTTACTCATGCGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGA                         TAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
genomic: ACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGAgtaagttttt ... aatattgtagTAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
EST: gi|151409640|gb|EV279448.1|EV279448
EST:     ACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGA                         TAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT
genomic: ACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGAgtaagttttt ... aatattgtagTAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCT