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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTTTTGTGGGAAGGAAATCTGTTGTCAAGGAACGCTTCTCAAAGAAGTACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagatttagaaaaaaaaaatgtttttttttttcttgctgaagctctatatgtttagcagtgttttgttgcatttcttgaatgcattgtttcaccaattggtttttggagca

Basic information

species Glycine max
transcript GLYMA18G06300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G06300.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 3
CTTCTTTTGTGGGAAGGAAATCTGTTGTCAAGGAACGCTTCTCAAAGAAGTACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagatttagaaaaaaaaaatgtttttttttttcttgctgaagctctatatgtttagcagtgttttgttgcatttcttgaatgcattgtttcaccaattggtttttggagca
     |||||||||||||  | |||||||||||| ||||| |||||||||||| |||||||| ||||||| |||||| | || |||||||| || ||||||||||| ||  | |           || ||   || ||| |     ||| ||  | ||         ||    | |||   || |      || || |                
-AAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCTTTTCAAAGAAGTACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttctggacctgggg----ttcttacctttttgtt-----tctgta-atataatgacacaatgccctacttccaaaacggcacccttgactag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208025471|gb|GD822917.1|GD822917
EST:     TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC                         GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: gi|151412911|gb|EV282723.1|EV282723
EST:     TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC                         GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: gi|192295996|gb|FG989404.1|FG989404
EST:     TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC                         GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: gi|209704846|gb|BW661676.1|BW661676
EST:     TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC                         GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: gi|14258455|gb|BG881363.1|BG881363
EST:     TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC                         GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: gi|58023446|gb|CX710187.1|CX710187
EST:     TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC                         GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: gi|6719317|gb|AW306964.1|AW306964
EST:     TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC                         GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGNGGTTTGTACTCCTGT
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: gi|58025042|gb|CX711783.1|CX711783
EST:     TACAGGCATCC-ACTTTTGATTCAAAATTGACCCTCAAGCGCTAAAATGC                         GGAGGCAAGGTGCATGACCAAAGCAA-GCGGACTTGGGGTTTGTACTCCTG
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGC-GACTTGGGGTTTGTACTCCTG
EST: gi|192296716|gb|FG991284.1|FG991284
EST:     TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC                         GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT