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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAACACAAGTTGTTGCATCACGACTCTTCTAAATGttagtaccttctaatctgtttattattatatttagtaaaaaggaaaatctaatataaatatatagaagttcatttgaatgaccctctaatatgtgagagcttaatttgattttaga

Basic information

species Glycine max
transcript GLYMA18G04910.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 3
-CATGGAGGCACGTACAAGGTTTTGAAAAACTTGCTCAAACACAAGTTGTTGCATCACGACTCTTCTAAATGttagtaccttctaatctgtttattattatatttagtaaaaaggaaaatctaatataaatatatagaagttcatttgaatgaccctctaatatgtgagagcttaatttgattttaga-------
 ||||||||||| |||||||| ||||| |||||||||||  | ||| | ||||| || |||||||| |||||| || | ||  |||  |    | ||| | |   ||||||    |   |   ||  |  |   || |  |  |  | | | ||     || |   |   | | |  ||  || |          
GCATGGAGGCACTTACAAGGTCTTGAAGAACTTGCTCAAGTATAAGCTTTTGCACCATGACTCTTCAAAATgtaaggaactattaa--tagaaactataaaac--agtaaacctcatttttcgatccatttgattatatttatagcttattcacaaaaaaaaaaaggcttgatcatgtttgttctgtgcatctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991103|gb|BI316776.1|BI316776
EST:     TTGAAAAACTTGCTCAAACACAAGTTGTTGCATCACGACTCTTCTAAATA                         TGATGGGTTCCGCCTTACCTACCTTGGTTATGATTTTCTTGCCATTAAGAC
genomic: TTGAAAAACTTGCTCAAACACAAGTTGTTGCATCACGACTCTTCTAAATGttagtacctt ... tgattttagaTGATGGGTTCCGCCTTACCTACCTTGGTTATGATTTTCTTGCCATTAAGAC
EST: gi|298168888|gb|HO009818.1|HO009818
EST:     TTGAAAAACTTGCTCAAACACAAGTTGTTGCATCACGACTCTTCTAAATA                         TGATGGGTTCCGCCTTACCTACCTTGGTTATGATTTTCTTGCCATTAAGAC
genomic: TTGAAAAACTTGCTCAAACACAAGTTGTTGCATCACGACTCTTCTAAATGttagtacctt ... tgattttagaTGATGGGTTCCGCCTTACCTACCTTGGTTATGATTTTCTTGCCATTAAGAC