Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTGACACTACACATGAAGATAACACCATCTTCTCTTTCGAGATTGGAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaatagtaacaaagcaaacttttgatgaaactatatttgaataagggtttttaattttatctcatgcttatctgctaattttcccagg

Basic information

species Glycine max
transcript GLYMA18G04170.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G04170.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g62610.1 (Oryza sativa), 5'ss of exon 5
-GTTTTTGACACTACACATGAAGATAACACCATCTTCTCTTTCGAGATTGGAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaatagtaacaaagcaaacttttgatgaaactatatttgaataagggtttttaattttatctcatgcttatctgctaattttcccagg
 || ||||||||||| |||||||| ||| || ||||||| || || |||||| |||| | ||| |||||||| ||||| || || |||||||| ||||||||  |   ||         || |  |  | ||||  | |||    ||  ||   ||||  |  ||   | || |  |    |      |  || 
AGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGgtaaatggatgaactgttcgctagttcattatgat-caatagcccaaacagttcttttgctgataatac-tgttgttaaattggacacctgag-

upper sequence: GLYMA18G04170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g01900.t01 (Vitis vinifera), 5'ss of exon 3
-GTTTTTGACACTACACATGAAGATAACACCATCTTCTCTTTCGAGATTGGAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaatagtaacaaagcaaacttttgatgaaactatatttgaataagggtttttaattttatctcatg--cttatctgctaattttcccagg
 |||||||||||||||||||| ||||| ||  | ||||| || ||| |||| || |||| ||| || ||||| ||||| |||||  ||||||| ||||||||  | | ||  | |||     | |||   ||   |   | | ||  ||| | |      |  | |  ||||  ||| | || |  || | |||| 
AGTTTTTGACACTACACATGAGGATAATACAGTGTTCTCATTTGAGCTTGGGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctattcttacagctttatcttgccat---atcttttctggttaaagttgaaagttcctgttacatgttcttttatgttgtttcttccag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193802|gb|HO040450.1|HO040450
EST:     AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGG                         TTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
genomic: AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaata ... ttttcccaggTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
EST: gi|298188914|gb|HO035607.1|HO035607
EST:     AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGG                         TTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
genomic: AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaata ... ttttcccaggTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
EST: gi|5676869|gb|AI937999.1|AI937999
EST:     GGCTTGGGAAATTGCAGTGAAAACCATGAAGG                         TTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
genomic: GGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaata ... ttttcccaggTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
EST: gi|298175755|gb|HO018352.1|HO018352
EST:     AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGG                         TTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
genomic: AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaata ... ttttcccaggTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
EST: gi|21887331|gb|BQ740544.1|BQ740544
EST:     AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGG                         TTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
genomic: AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaata ... ttttcccaggTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
EST: gi|298169599|gb|HO020959.1|HO020959
EST:     AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGG                         TTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
genomic: AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaata ... ttttcccaggTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
EST: gi|298171704|gb|HO021296.1|HO021296
EST:     AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGGGAAAACCATGAAGG                         TTGGAGAAGTTGCAAAATTAACTTGCAAGCCAGAATATGCATATGGTAGTG
genomic: AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaata ... ttttcccaggTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
EST: gi|298185077|gb|HO030290.1|HO030290
EST:     AAAGGGCAGTGTTATCAATGCTTGGGAAATTGCAGTGAAAACCATGAAGG                         TTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
genomic: AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaata ... ttttcccaggTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
EST: gi|298169647|gb|HO021007.1|HO021007
EST:     AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGG                         TTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
genomic: AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaata ... ttttcccaggTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
EST: gi|18726884|gb|BM523811.1|BM523811
EST:     AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGG                         TTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG
genomic: AAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaata ... ttttcccaggTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGTAGTG