1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAAGTTTAAAAATATATAGAGCAATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTggtatgtactttttgtacacctgcatttgcataattgttttggcactggcagagctgacgtatgcaattctttattgtttgtgttttcttgttccatgaataaaagcatcatcctatgtttagtatatttaataacatcaactgaaactttataccgattccaatattttattca
species | Glycine max |
transcript | GLYMA18G04160.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATT GCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTEST: gi|6481566|gb|AW200837.1|AW200837
genomic: GCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTggtatgtact ... attttattcaGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGT
EST: GCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATT GCGCGTTCATGCAACACGTCCTAGTAATTCCAATTTCACTCACTTTTCTCGEST: gi|21255789|gb|BQ452677.1|BQ452677
genomic: GCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTggtatgtact ... attttattcaGCGCGTTCATGCAACACGTCCTAGTAATTCCAATT-CACTCACTTTTCTCG
EST: GCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATT GCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTEST: gi|58016501|gb|CX703243.1|CX703243
genomic: GCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTggtatgtact ... attttattcaGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGT
EST: AAAATGGGTTTTC-GGATTTATACTTGAGAGGCGAGCATT GCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGT
genomic: AAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTggtatgtact ... attttattcaGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGTTTAAAAATATATAGAGCAATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTggtatgtactttttgtacacctgcatttgcataattgttttggcactggcagagctgacgtatgcaattctttattgtttgtgttttcttgttccatgaataaaagcatcatcctatgtttagtatatttaataacatcaactgaaactttataccgattccaatattttattca
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG