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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAATGGCTGCAGCATTTGCGACTAGACGCTTGTTATATCCAAGTCAAGCTTTTGACTTGGTACATTGTTCACGATGTAGAATTAATTGGACTAGAGATggtatgcgtttttctctcttgtttgatgtgcaattgttcttggtaacaatgaggagaaaaattatatgcagaggtctataacagctaatcaacaatagaaacgagaatgcatgttggaactgccactttttttgctagtgatttgtatacatcattttttttgtgttttgatgcttaaacttacttgtgatgaa

Basic information

species Glycine max
transcript GLYMA18G03890.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G39750.1 (Arabidopsis thaliana), 5'ss of exon 3
AGCAATGGCTGCAGCATTTGCGACTAGACGCTTGTTATATCCAAGTCAAGCTTTTGACTTGGTACATTGTTCACGATGTAGAATTAATTGGACTAGAGATggtatgcgtttttctctcttgtttgatgtgcaattgttcttggtaacaatgaggagaaaaattatatgcagaggtctataacagctaatcaacaatagaaacgagaatgcatgttggaactgccactttttttgctagtgatttgtatacatcattttttttgtgttttgatgcttaaacttacttgtgatgaa
 || ||||| |||||||||||||| || || |||||||||||||| |||||||||||  |  | ||||||||| |||||||||| || |||||| | ||||||| |   || | |    || |||||       |   | |  ||   || || | || | | | ||        || |||    |||    |  |   |||        ||| |  | ||   | |  || | |     |||   |    ||   | |||  |  |||| || | ||                
-GCTATGGCGGCAGCATTTGCGACAAGGCGTTTGTTATATCCAAGCCAAGCTTTTGATCTTATTCATTGTTCAAGATGTAGAATCAACTGGACTCGTGATGgtaagg--ttctatggtgtgcttgattc-----ttcacctaata--catcagaaaaagattaagattgcacctactgtaatttttaactccctgtgtgaac-------tatgctctagcttttattacttgtacagaaaattctcac---tctgctgtttcattctttg-tgataaag---------------

upper sequence: GLYMA18G03890.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g02250.t01 (Vitis vinifera), 5'ss of exon 3
AGCAATGGCTGCAGCATTTGCGACTAGACGCTTGTTATATCCAAGTCAAGCTTTTGACTTGGTACATTGTTCACGATGTAGAATTAATTGGACTAGAGATggtatgcgtttttctctcttgtttgatgtgcaattgttcttggtaacaatgaggagaaaaattatatgcagaggtctataacagctaatcaacaatagaaacgagaatgcatgttggaactgccactttttttgctagtgatttgtatacatcattttttttgtgttttgatgcttaaacttacttgtgatgaa
 |||||||  ||||| |||| |||| | || ||||| ||||| ||||| |||||||||||| ||||||||||| ||||  ||||  | |||||  | ||||||| || | ||||| |       | |||     |||  |||    |     |    |  | | | |       | | ||   |||||  || || ||         | ||   |                                                                               
-GCAATGGTGGCAGCTTTTGTGACTCGTCGTTTGTTGTATCCCAGTCAGGCTTTTGACTTGATACATTGTTCAAGATGCCGAATCGACTGGACCCGTGATGgtaagc-tatttcttttacaccaggtgtttc-ctgtctttg----cctcatgcctgattactctgt-------tttgtacttgctaagtaa-aaaagggctattggttcaaagt-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193511024|gb|FK468937.1|FK468937
EST:     CTTTTGACTTGGTACATTGTTCACGATGTAGAATTAATTGGACTAGAGAT                         GATGGGATACTGCTTCTTGAAGTTA-TAGGATGCTAAGAGCAGGAGGGTAC
genomic: CTTTTGACTTGGTACATTGTTCACGATGTAGAATTAATTGGACTAGAGATggtatgcgtt ... ttgtgatgaaGATGGGATACTGCTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTAC