Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGCTGAATTCTCTTGGTTATGAGATTATTTTGGTGTCATCAGGTGCTGTTGGCCTTGGTCGCCAAAGGCTTAGATACAGAAAATTAATTAACAGCAGgtaataaagttgtaacacctttgtttttgttttgttttgtttctctcagcatgcacatgtgaggttggttgaaattgtaatttacttgggtctttcatgggacatgtcacag

Basic information

species Glycine max
transcript GLYMA18G03830.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G55610.2 (Arabidopsis thaliana), 5'ss of exon 3
AGGAGCTGAATTCTCTTGGTTATGAGATTATTTTGGTGTCATCAGGTGCTGTTGGCCTTGGTCGCCAAAGGCTTAGATACAGAAAATTAATTAACAGCAGgtaataaagttgtaacacctttgtt-tttgttttgttttgtttctctcagcatgcacatgtgaggttggttgaaattgtaatttacttgggtctttcatgggacatgtcacag
 |||| | || ||   ||| | |||| | |||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||||| | |||||||||| |||   ||| ||||  |||    ||| |||||||||   | | || |  |||  || |  | |   ||   ||| | |                                
CGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGTGCCGTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACAGCAGgttatattattggaacaagtttaaagttttttttgtttttagtgtttctg--tgctgatttttgttctcttcggattttcag-------------------------------

upper sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 3
AGGAGCTGAATTCTCTTGGTTATGAGATTATTTTGGTGTCATCAGGTGCTGTTGGCCTTGGTCGCCAAAGGCTTAGATACAGAAAATTAATTAACAGCAGgtaataaagttgtaacacctttgtttttgttttgttt-tgtttctctcagcatgcacatgtgaggttggttgaaat-tgtaatttacttgggtctttcatgggacatgtcacag
| ||  |||| ||||  || ||| || | ||| ||||  ||||||||||||||||||||||||||||||||||||||||||| |  ||| | ||||||||||  || | ||    |   | ||  ||  | |  | | ||| | ||| |   |     |     |   ||    || ||| |||     |   |||   |              
AAGAATTGAACTCTCAAGGATATCAGGTCATTGTGGTCACATCAGGTGCTGTTGGCCTTGGTCGCCAAAGGCTTAGATACAGGAGTTTACTCAACAGCAGgttttacaattt---cctttctgccttgatatcatatatgtatttcttaattttttttttctttgccagtgagtatatgttattgttaagtaccttctcttca-----------