Sequence
atgc intronic sequence ATGC exonic sequenceACTTGGTTTGGTTGATCCTAACACAGGTGAATGCCTGCCTGCTGCAATGCTACCATATTGTGGAAGGACTTTGTTGGAAGGTCTTATAAGAGATCTTCAGgtatatagatataccactatcaaacacaatcatacttcttatgcccaattttttttaataaaatggagacaagattaatcatttatgctgggcgtggaaatatctaattctgctgtttcacatttgaag
Basic information
species | Glycine max |
transcript | GLYMA18G02900.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G02900.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G56040.1 (Arabidopsis thaliana), 5'ss of exon 3
ACTTGGTTTGGTTGATCCTAACACAGGTGAATGCCTGCCTGCTGCAATGCTACCATATTGTGGAAGGACTTTGTTGGAAGGTCTTATAAGAGATCTTCAGgtatatagatataccactatcaaacac----aatcatacttcttatgcccaattttttttaataaaa--tggagacaagattaatcatttatgctgggcgt--ggaaatatc--taattctgctgtttcacatttgaag--
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ACTAGGTTTGATTGATTCAGAAACTGGAGAATGCCTTCCTGCAGCAATGCTTGCTCATTGTGGACGAACTTTGTTGGAGGGACTTATTAGAGATCTTCAGgtacatgtgcactcatttcttggtgactctgggtgggtttgtctacatttaaatgtatgaaaggaaactttgaggtacgaaactgtatttgttcatgtcattagaaaatgttatttatccttttttcccggaattggctag
upper sequence: GLYMA18G02900.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0067g01470.t01 (Vitis vinifera), 5'ss of exon 3
ACTTGGTTTGGTTGATCCTAACACAGGTGAATGCCTGCCTGCTGCAATGCTACCATATTGTGGAAGGACTTTGTTGGAAGGTCTTATAAGAGATCTTCAGgtatatagatataccactatcaaacacaatcatacttcttatgccc--aattttttttaataaaatggagacaagattaatcatttatgctggg-cgtggaa------atatctaattctgctgtttcacatttgaag---------------
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GCTTGGTTTGGTCGATCCTGACACAGGTGAATGTCTTCCTGCTGCAATGCTTCCTTATTGTGGACGGACCTTATTGGAAGGTCTTATAAGAGATCTTCAGgtata-ggatctctgtttgtcaagcttgaatat-ttgtttatgcctttgatgcttgacaagaagaacgagttagtactggaactattagttaaatcatgaaattatgcatatgcatttcaaatgatatttatctaattttttgcaactgcaag
upper sequence: GLYMA18G02900.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ23884 (Selaginella moellendorffii), 5'ss of exon 4
ACTTGGTTTGGTTGATCCTAACACAGGTGAATGCCTGCCTGCTGCAATGCTACCATATTGTGGAAGGACTTTGTTGGAAGGTCTTATAAGAGATCTTCAGgtatatagatataccactatcaaacacaatcatacttcttatgcccaattttttttaataaaatggagacaagattaatcatttatgctgggcgtggaaatatctaattctgctgtttcacatttgaag
| || | || || || |||||| |||| |||| |||||||| ||||||||||| |||||||||||||||| || ||| | || | ||||| | ||| |||| | | || ||| | || || |
CTTGGGACTTGTCGACGACGTGACTGGTGAAAGCCTTCCTGTGGCAATGCTGCCATATTGTGGTCGGACTTTGTTGGAAGGCCTCATACGCGACTTACAGgt-tctagcc-taccttgaattgatgtggagctaattc--acttcctgttcctacag------------------------------------------------------------------------
upper sequence: GLYMA18G02900.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ10017 (Selaginella moellendorffii), 5'ss of exon 4
ACTTGGTTTGGTTGATCCTAACACAGGTGAATGCCTGCCTGCTGCAATGCTACCATATTGTGGAAGGACTTTGTTGGAAGGTCTTATAAGAGATCTTCAGgtatatagatataccactatcaaacacaatcatacttcttatgcccaattttttttaataaaatggagacaagattaatcatttatgctgggcgtggaaatatctaattctgctgtttcacatttgaag
| || | ||||| || |||||| |||| |||| |||||||||||||||||||| ||||||||||||||||||| ||| | || | ||||| | ||| |||| | | || ||| | || || |
CTTGGGACTTGTTGACGACGTGACTGGTGAAAGCCTTCCTGTGGCAATGCTACCATATTGTGGTCGGACTTTGTTGGAAGGTCTCATACGGGACTTACAGgt-tctagcc-taccttgaattgatgtggagctaattc--acttcctgttcctacag------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7693119|gb|AW761216.1|AW761216EST: TATTGTGGAAGGACTTTGTTGGAAGGTCTTATAAGAGATCTTCAG GCTAGAGAATTCTTGTACTTCAAGTTATATGGGAAACAATGCATCACACCT
genomic: TATTGTGGAAGGACTTTGTTGGAAGGTCTTATAAGAGATCTTCAGgtatatagat ... acatttgaagGCTAGAGAATTCTTGTACTTCAAGTTATATGGGAAACAATGCATCACACCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTGGTTTGGTTGATCCTAACACAGGTGAATGCCTGCCTGCTGCAATGCTACCATATTGTGGAAGGACTTTGTTGGAAGGTCTTATAAGAGATCTTCAGgtatatagatataccactatcaaacacaatcatacttcttatgcccaattttttttaataaaatggagacaagattaatcatttatgctgggcgtggaaatatctaattctgctgtttcacatttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC