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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCTCCATAGGTATCTCGACCTCTTCCACATACTTATTTACAAGgtatttatctatctatttgttactgttttggataataataatacctatagactacatatgtttgattcatggttttatgttgttgctctcatattttaccaaag

Basic information

species Glycine max
transcript GLYMA18G01460.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01460.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 2
-----------------------------------------------------GCTTTCTCCATAGGTATCTCGACCTCTTCCACATACTTATTTACAAGgtatttatctatctatt--tgttactgttt-tggataataataatacct-atagactacatatgtttgattcatggttttatgttgttgctctcatattttaccaaag--------------------------------------------------------------
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CTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATGGATTGTTCATGCACGTGCCTACTCCCCAAGTATCTCGATCTCTTCCACATACTCATTTACAAGgttggttcctgtttattggtgttgatatttgcttctgacatgaaggtcagagaaatcagaagtgatggcttagcagattgccactttcatttttcttctgtaatgaaaccagacctcccacaaggtggctcatgaatgttttctgttggtttcgttcttatattctacag