1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttgtctcctgaaatctgtgggattattattattattatttgtgcattgttgctatttatgtcttagtttttgtgcagatctcatcttggggcc...
species | Glycine max |
transcript | GLYMA18G01280.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATGCAAGGTCATCCAAGGAAGCTGAGGAGTTTTCCAAGGAG ATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTACCEST: gi|213600146|gb|DB964310.1|DB964310
genomic: TATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttg ... ttccttgtagATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTAAC
EST: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAG ATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTAACEST: gi|298177236|gb|HO023483.1|HO023483
genomic: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttg ... ttccttgtagATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTAAC
EST: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAG ATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGAEST: gi|7042369|gb|AW472263.1|AW472263
genomic: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttg ... ttccttgtagATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGA
EST: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAG ATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTAACEST: gi|22540327|gb|BU090170.1|BU090170
genomic: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttg ... ttccttgtagATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTAAC
EST: GTCAACTATGCAAGGTCATCCAAGGAAGCTGGAG-ANGGTT-CCAAGGAG ATCGAGGAGTTTEST: gi|192334676|gb|FK025223.1|FK025223
genomic: GTCAACTATGCAAGGTCATCCAAGGAAGCTG-AGGA-GGTTTCCAAGGAGgtaaaatttg ... ttccttgtagATTGAGGAGTTT
EST: TGGTCAACTATGTAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAG ATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTAACEST: gi|192296853|gb|FG990229.1|FG990229
genomic: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttg ... ttccttgtagATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTAAC
EST: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAG ATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTAACEST: gi|298187125|gb|HO034274.1|HO034274
genomic: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttg ... ttccttgtagATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTAAC
EST: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAG ATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGEST: gi|19345915|gb|BM890795.1|BM890795
genomic: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttg ... ttccttgtagATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATG
EST: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAAGAGGTTTCCAAGGAG ATTGAAGAGTTTGGTGGTEST: gi|192333774|gb|FK025497.1|FK025497
genomic: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttg ... ttccttgtagATTGAGGAGTTTGGTGGT
EST: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAG ATTGAGGAGTTTGGTGGTCAAGCCCTTACATTTGGTGGAGATGTTTCTAAC
genomic: TGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttg ... ttccttgtagATTGAGGAGTTTGGTGGTCAAGCTCTTACATTTGGTGGAGATGTTTCTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGgtaaaatttgtctcctgaaatctgtgggattattattattattatttgtgcattgttgctatttatgtcttagtttttgtgcagatctcatcttggggcc
- - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG