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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGGTGATATAATGATCTCGTGTCTTGGAGATAAAGATGGAAATGCTGCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatctagaagccagagttttgtaaaactgttaacacagaatcgtttaataattgcttgtgcgttgaacattacacgtgttacatcattggccagaaacaattctatttgaaactacttacgtagttagtatttcgatatctaattttctaattatattatattgtatcctacttcacattgattag

Basic information

species Glycine max
transcript GLYMA18G00590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00590.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G14030.1 (Arabidopsis thaliana), 5'ss of exon 3
CTTCTGGTGATATAATGATCTCGTGTCTTGGAGATAAAGATGGAAATGCTGCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatctagaagccagagttttgtaaaactgttaacacagaatcgtttaataattgcttgtgcgttgaacattacacgt-gttacatcattggccagaaacaattctatttgaaactacttacgtagttagtatttcgatatctaattttctaattatattatattgtatcctacttcacattgattag
|  | || || ||  || | || |||||||||||| |||| || ||||||   || ||||| |||||||||||||| ||||| |||||  | |||   |||||      |  ||  || ||  || |    |||||     ||  || | |    |||  |  |   |    ||||    ||  ||  ||||                                                                                                    
CCACGGGCGAGATCTTGGTGTCCTGTCTTGGAGATGAAGAGGGGAATGCTAAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAGgtatcttattgcaaaacaaagcatttt----ctgttt---tagtttcttgtcgctattagtcatatat----cattgttggttattgtatcag---------------------------------------------------------------------------------------------------

upper sequence: GLYMA18G00590.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0029g00240.t01 (Vitis vinifera), 5'ss of exon 3
CTTCTGGTGATATAATGATCTCGTGTCTTGGAGATAAAGATGGAAATGCTGCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatctagaagccagagttttgtaaaactgttaacacagaatcgtttaataattgcttgtgcgttgaacattacacgtgttacatcattggccagaaacaattctatttgaaactacttacgtagttagtatttcgatatctaattttctaattatattatattgtatcctacttcacattgattag
||||||||||||||||| | || || |||||||||  ||||||||| |||| ||||| |||||||||||| ||||| || || || |||||||| ||||||| ||| |  | |   |    |   ||  |      | |||| | ||  ||   |  |  ||   | |  | |  | ||    ||  |  ||||   ||| |    | | |                                                                                
CTTCTGGTGATATAATGGTTTCATGCCTTGGAGATGGAGATGGAAAAGCTGAAGGAAGTGGATTTCTTCTACTTGACTCAGAATTCAATGTGAAAGGAAGgt-ctctttcacacatccacatacagtgca----caagcacacactcccttttcacattttta-acataaatctatgca---atttgagaattg--tagacatgggttttt--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321462|gb|FK011748.1|FK011748
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|213610719|gb|DB961194.1|DB961194
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTC
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTC
EST: gi|208341886|gb|GE135508.1|GE135508
EST:     CTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: CTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|192327467|gb|FK017824.1|FK017824
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|4289585|gb|AI438045.1|AI438045
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGACACCGGGTCACAGCCCACTATTNTGG-TATGACTTTTGGTACC
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATT-TGGGTATGACTTTTGGTACC
EST: gi|308098254|gb|HO759995.1|HO759995
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGT
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGT
EST: gi|16995993|gb|BM085365.1|BM085365
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|254325879|gb|GR838760.1|GR838760
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|192301362|gb|FG998382.1|FG998382
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|207729173|gb|GD705837.1|GD705837
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|209724301|gb|BW662914.1|BW662914
EST:     GAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|254335972|gb|GR841297.1|GR841297
EST:     GCAG-AAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         -TGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|193627604|gb|FK576288.1|FK576288
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|254318556|gb|GR832724.1|GR832724
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|213592648|gb|DB955806.1|DB955806
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGAGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|192323156|gb|FK017382.1|FK017382
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|254329343|gb|GR833715.1|GR833715
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|6567240|gb|AW234851.1|AW234851
EST:     GCACGAAATGGATGTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAAACCGG-TCACAGCCCACTA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAA-CCGGGTCACAGCCCACTA
EST: gi|254347236|gb|GR853485.1|GR853485
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|254322235|gb|GR837649.1|GR837649
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|213611956|gb|DB958938.1|DB958938
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|151410035|gb|EV279843.1|EV279843
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
EST: gi|209726336|gb|BW659636.1|BW659636
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGgtactcatct ... cattgattagGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA