Sequence
atgc intronic sequence ATGC exonic sequenceGGAGAGATTGGCTTCACGTTTTCATTTCCTGTGAAGCAGGCATCTATTGATTCTGGCATACTAATCAAGTGGACCAAGGGTTTTGCAGTGTCTGGAACAGtatgtttttatctatctatgctgatcactattatttaacttagtgtgcattctttcacagatcaacttaaagcaaaactctaacaatatacagatcgatc...
Basic information
species | Glycine max |
transcript | GLYMA17G37720.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G37720.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g09890.1 (Oryza sativa), 5'ss of exon 3
-GGAGAGATTGGCTTCACGTTTTCATTTCCTGTGAAGCAGGCATCTATTGATTCTGGCATACTAATCAAGTGGACCAAGGGTTTTGCAGTGTCTGGAACAGtatgtttttatctatctatgctgatcactattatttaacttagtgtgcattctttcacagatcaacttaaagca----aaactctaacaatatacagatcgatc
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GAGAGAGTTAGGCTTCACATTCTCCTTTCCGGTGAATCAGACTTCTATTGATTCTGGCATTCTGATCAAGTGGACAAAAGGTTTTGCTGTCTCTGGAACTgtaagactttatttcataatgc--attttttatgtatagtttc-catg-attctttgattcat-gatgtatggcactacaaattcttatcttgtcccgtttttat
upper sequence: GLYMA17G37720.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g14230.t01 (Vitis vinifera), 5'ss of exon 3
-GGAGAGATTGGCTTCACGTTTTCATTTCCTGTGAAGCAGGCATCTATTGATTCTGGCATACTAATCAAGTGGACCAAGGGTTTTGCAGTGTCTGGAACAGtatgt---ttttatctatctatgctg-atcactattatttaacttagtgtgcattctttcacagatcaacttaa-agcaaaactctaacaatatacagatcgatc
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AAGAGAGATTGGCTTTACATTTTCTTTCCCAGTCAAGCAAACATCAATTGACTCTGGCATACTAATGAAGTGGACAAAGGGTTTTGCTGTCTCTGGAACGgtttgtaatttttgcacttttatattatataaacagcaattattattcatggttttatggtgactttcaagttagcaacaaaaatcatatttgatgcaga------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192326168|gb|FK016975.1|FK016975EST: TTCTGGCATACTAATCAAGTGGACCAAGGGTTTTGCAGTGTCTGGAACAG CAGGGAGAGATGTGGTGGCTTGTCTGAACGAGGCAATGGAAAGGCAAGGAA
genomic: TTCTGGCATACTAATCAAGTGGACCAAGGGTTTTGCAGTGTCTGGAACAGtatgttttta ... tttatgcaggCAGGGAGAGATGTGGTGGCTTGTCTGAACGAGGCAATGGAAAGGCAAGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGAGATTGGCTTCACGTTTTCATTTCCTGTGAAGCAGGCATCTATTGATTCTGGCATACTAATCAAGTGGACCAAGGGTTTTGCAGTGTCTGGAACAGtatgtttttatctatctatgctgatcactattatttaacttagtgtgcattctttcacagatcaacttaaagcaaaactctaacaatatacagatcgatc
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