Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCTGCCGCAGTAAAGTAGATAAGGAAAAACTGACTGCTGGTACGAGAGTCGTTCTTGATATGACGACGCTCACCATAATGCGGGCTCTTCCACGTGAagtaagtttttgctgtttattccttttagatatctatttgatttggtgcatgcgatgtttgtgttctttctgaaagtcatgtcctagtttttttgtgtctgatggtcaatatgatatatcgtgtgttgaca

Basic information

species Glycine max
transcript GLYMA17G37220.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37220.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 3
TTGGCTGCCGCAGTAAAGTAGATAAGGAAAAACTGACTGCTGGTACGAGAGTCGTTCTTGATATGACGACGCTCACCATAATGCGGGCTCTTCCACGTGAagtaagtt-------tttgctgttta----ttccttttagatatctatttgat---ttggtgcatgcgatgtttgtgttctttctgaa-agtcatg-----tcctagtttttttgtgtctgatggtcaatatgatatatcgtgtgttgaca----------------------------------------
 |||||| ||||||||||| |||||||||||||||||| |||| || ||||| |||||||||||||| || ||||| || ||||| ||||||||||||||||||||||       ||  || | |     || || |   ||| | | | |||   || |||         ||  || |   ||      ||||||     |   |   |||| ||   |||   |||  |    | |  | | |||                                            
-TGGCTGTCGCAGTAAAGTGGATAAGGAAAAACTGACTTCTGGAACAAGAGTGGTTCTTGATATGACAACACTCACAATCATGCGAGCTCTTCCACGTGAAgtaagttaccatggttctctatgtggactttgctgtgtaataccaactggataacttagtggcattagaattgatgattactccatttggtcatgattattttcaacattttagttagtgacaatcataaaagaaaaaagagagtttgtgtggttctcctgatagactgtgctatgatgatgtttaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298188174|gb|HO034867.1|HO034867
EST:     GTCGTTCTTGATATGACGACGCTCACCATAATGCGGGCTCTTCCACGTGA                         AGTTGATCCAGTAGTTTACAATATGCTGCATGAGGATCCTGGTAATATCAG
genomic: GTCGTTCTTGATATGACGACGCTCACCATAATGCGGGCTCTTCCACGTGAagtaagtttt ... tgtgttgacaGGTTGATCCAGTAGTTTACAATATGCTGCATGAGGATCCTGGTAATATCAG
EST: gi|16281445|gb|BI944491.1|BI944491
EST:     GTCGTTCTTGATATGACGACGCTCACCATAATGCGGGCTCTTCCACGTGA                         AGTTGATCCAGTAGTTTACAATATGCTGCATGAGGATCCTGGTAATATCAG
genomic: GTCGTTCTTGATATGACGACGCTCACCATAATGCGGGCTCTTCCACGTGAagtaagtttt ... tgtgttgacaGGTTGATCCAGTAGTTTACAATATGCTGCATGAGGATCCTGGTAATATCAG