Sequence
atgc intronic sequence ATGC exonic sequenceATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCGAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttag
Basic information
species | Glycine max |
transcript | GLYMA17G37150.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 5'ss of exon 4
ATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCGAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttag
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ATTTCTAAAAGCAAGGAGATTTGACATTGAGAAAGCAAAGCAAATGTGGACTGACATGCTTAAATGGAGGAAGGAGTACGGTACAGATACAATTGTTGAGgttagtgttcttgcttgtgcc-tataaaacaatttgg-attttgtttggctataaataatgcctgtaactacatttctctgtag------------------------------------------------------
upper sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G171354_T03 (Zea mays), 5'ss of exon 4
ATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCGAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttag
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ATTTCTAAAAGCAAGGAAATTTGATATCGACAAAGCAAAGCAAATGTGGATGGATATGCTTCATTGGCGGAGGGAGTATGGCACTGATACGATTTTGGAGgtcagtgtctgagctttagtcagacattttttaagtttgtttggcttatatggctcctgtcttaa-aacaataatctgaaatcattttg----tgtttttcatag---------------------------------
upper sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G75370.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCGAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttag
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ATTCTTGAAAGCTAGGAAATTTGATATTGGGAAAACCAAGTTAATGTGGAGTAATATGATCAAATGGAGAAAAGATTTTGGTACTGACACCATTTTCGAGgtgaattacatgtttttaaaaaaa-atcttaatatgttacttt---taatctcatgtgatggttttaatctcaatatgtgtgttaatag-------------------------------------------------
upper sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 3
ATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCGAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttag
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ATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGACCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGgtaa--tctcaaatttcatcccatgattagattctattttctgaagcaatgttccattactggttt--ctcagatctattggtttgttaacattgttctaattgagatttcatgtt--tctcccag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193580540|gb|FK534515.1|FK534515EST: CCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAG GATTTTGAATTCGGTGAGTTGAATGAAGTCCTGCAGTGCTATCCACATGGC
genomic: CCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagtcatc ... ttctctttagGATTTTGAATTCGGTGAGTTGAATGAAGTCCTGCAGTGCTATCCACATGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCGAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA