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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTATTCCAAAAGCTCTCATGCCTCTTGAGgtatttgtgctactacctgtttaactgttacctttaatgtgctgtgtcagtttacttgtttttctttctgtgtacagttaaattgatcattggcaatgaa...

Basic information

species Glycine max
transcript GLYMA17G34510.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312708|gb|FK004396.1|FK004396
EST:     GGTTATTCCAAAAGCTCTCATGCCTCTTGAG                         ATATCTGGTGAACCAGTTGGTGAAGTAAGAATTGTTTCAGATATGCATGAG
genomic: GGTTATTCCAAAAGCTCTCATGCCTCTTGAGgtatttgtgc ... attttgacagATATCTGGTGAACCAGTTGGTGAAGTAAGAATTGTTTCAGATATGCATGAG
EST: gi|298195489|gb|HO043880.1|HO043880
EST:     GGTTATTCCAAAAGCTCTCATGCCTCTTGAG                         ATATCTGGTGAACCAGTTGGTGAAGTAAGAATTGTTTCAGATATGCATGAG
genomic: GGTTATTCCAAAAGCTCTCATGCCTCTTGAGgtatttgtgc ... attttgacagATATCTGGTGAACCAGTTGGTGAAGTAAGAATTGTTTCAGATATGCATGAG