Sequence
atgc intronic sequence ATGC exonic sequenceTGGATAACGTGCTCTATGATTGGACTGACTCACCATCATCAGATTATTGTGCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACTgtgagttactgtgtccttggacattgtatataggcttcttcactttttcctagtcaatgaaaaacaaatcagttttgcattttctcttacccttgtttattttgcag
Basic information
species | Glycine max |
transcript | GLYMA17G34380.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G34380.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGATAACGTGCTCTATGATTGGACTGACTCACCATCATCAGATTATTGTGCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACTgtgagttactgtgtccttggacattgtatataggcttcttcactttttcctagtcaatgaaaaaca-aatcagttttgcattttctcttacccttgtttattttgcag
|| | || || || ||||| ||||| ||||| || || |||||||||| ||||||||| | || ||||| ||||| ||||| ||||||||||| |||| |||| || | | | | ||| || | || | | || || ||| ||| |||||| | | | || | | ||||| ||
TGAACAATGTTCTTTATGACTGGACAACTTCACCTTCTTCGGATTATTGTGTCTGGAGAGGTGTGTCTTGTGAAAATGTCACCTTCAATGTTGTTGCTCTgtaagtttcttcattcctttagattactattacagtggtttttggtgttcttgtgggaaaaagttgtaatttgttttgtgtgtgtt-------ttctatgttttgtag
upper sequence: GLYMA17G34380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 2
TGGATAACGTGCTCTATGATTGGACTGACTCACCATCATCAGATTATTGTGCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACTgtgagttactgtgtccttggacattgtatataggcttcttcactt--tttcctagtcaatg-----aaaaacaaatcagttttgcattttctcttacccttgtttattttgcag--------------------------------------------------------------
| || || || || ||||| |||||||| |||||||| ||||| || |||| |||||||| |||| ||||||||||||||||| |||||| ||||||||| || | |||| || | | | ||||| || || || || | ||| | | | | ||||| | || | | | || ||| | | | |
TTGACAATGTTCTATATGACTGGACTGATTCACCATCTTCAGACTACTGTGTTTGGAGAGGTGTATCTTGTGATAATGTTACCTTCAATGTTATTGCACTgtaagccatgtcctcctgctctcttttcttttcttttctttttttgtctttcttgtttgtattttaaaatgccatttaattttgtaagttttgtaatccatgtatgtgattaaattcttgtaagtttattgatattcaggttttgattttttattttttatttgcaaacattttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207691301|gb|GD673099.1|GD673099EST: GCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACT CAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAA
genomic: GCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACTgtgagttact ... tattttgcagCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGATAACGTGCTCTATGATTGGACTGACTCACCATCATCAGATTATTGTGCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACTgtgagttactgtgtccttggacattgtatataggcttcttcactttttcctagtcaatgaaaaacaaatcagttttgcattttctcttacccttgtttattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG