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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACGGGAGATACAATGTATAATCTTTTGAGGCTGGGTGAACTTGAAACTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAGgttcgttgtgcttttgattgacatcgctaaaagataatttgaagtttgtgttcagtgaatggagaatttaacctccctaacatcttaatatgcttgttctag

Basic information

species Glycine max
transcript GLYMA17G33430.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193573060|gb|FK527865.1|FK527865
EST:     CTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAG                         GTGTTATGGAATCCATTTGAAGATATTGTTCCAA
genomic: CTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAGgttcgttgtg ... cttgttctagGTGTTATGGAATCCATTTGAAGATATTGTTCCAA
EST: gi|193437062|gb|FK399933.1|FK399933
EST:     CTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAG                         GTGTTATGGAATCCATTTGAAGATATTGTTCCAAG
genomic: CTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAGgttcgttgtg ... cttgttctagGTGTTATGGAATCCATTTGAAGATATTGTTCCAAG
EST: gi|207767098|gb|GD739174.1|GD739174
EST:     CTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAG                         GTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAAAAAACT
genomic: CTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAGgttcgttgtg ... cttgttctagGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAAAAA-CT
EST: gi|193577186|gb|FK536591.1|FK536591
EST:     CTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAG                         GTGTTATGGAATCCATTTGAAGATATTGTT
genomic: CTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAGgttcgttgtg ... cttgttctagGTGTTATGGAATCCATTTGAAGATATTGTT
EST: gi|208309229|gb|GE103315.1|GE103315
EST:     CTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAG                         GTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAAAAACTT
genomic: CTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAGgttcgttgtg ... cttgttctagGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAAAAACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGACGGGAGATACAATGTATAATCTTTTGAGGCTGGGTGAACTTGAAACTGATAAGAATGACCGGCCTTTAGATCCGCCGAAGATATTATCAGTTGAGgttcgttgtgcttttgattgacatcgctaaaagataatttgaagtttgtgttcagtgaatggagaatttaacctccctaacatcttaatatgcttgttctag

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