1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcaccattaatccgtttgcaaaaatttcatagcttccctttttgattcataaaccacgtccccctagtcccttttttattattagaagatacggtt...
species | Glycine max |
transcript | GLYMA17G26900.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|14259240|gb|BG882148.1|BG882148
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|151412705|gb|EV282517.1|EV282517
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|16105581|gb|BI893321.1|BI893321
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|298190184|gb|HO032305.1|HO032305
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|151396592|gb|EV266469.1|EV266469
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTTCTCCTAGCCTTTACAATGGATCGCTGCTTAGCCGTTTGEST: gi|254342909|gb|GR859071.1|GR859071
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTC-TTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|23064041|gb|BU578814.1|BU578814
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|5753671|gb|AI960958.1|AI960958
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGACACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|207845484|gb|GD814073.1|GD814073
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|11687742|gb|BF595418.1|BF595418
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|298179735|gb|HO024950.1|HO024950
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|298197455|gb|HO044934.1|HO044934
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|151402880|gb|EV272693.1|EV272693
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGTTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|27424702|gb|CA936222.1|CA936222
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|6482381|gb|AW201644.1|AW201644
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCCGTT-GEST: gi|11412862|gb|BF424873.1|BF424873
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCC-GTTTG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGEST: gi|33390191|gb|CA853398.1|CA853398
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATAAAAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcaccattaatccgtttgcaaaaatttcatagcttccctttttgattcataaaccacgtccccctagtcccttttttattattagaagatacggtt
- - - AAGAAG
- - - - - AAGAAA
- - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - GCTGAT