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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATATAGTGGTGTTTATGGAACGGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaactaattcactgttttgacttcctatataaccaccagcaaaatgatacttctccatgttttctgaaaatgttaggctttctagatagtggttgtga...

Basic information

species Glycine max
transcript GLYMA17G23500.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G23500.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g35290.1 (Oryza sativa), 5'ss of exon 24
TCTATATAGTGGTGTTTATGGAACGGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaactaat-tcactgttttgacttcctatataaccaccagcaaaatgatacttctccatgttttctgaaaatgttaggct--ttctagatagtggttgtga
|||||||||||| |||| ||| || ||  | | ||||||||| ||  |||||||||| || |||||||| || ||||| ||||| ||||||||||||||||||  | |   | | |  | |  | || ||| ||   |     ||| |  |  |    | | ||||       | |        |    ||| |  | | |  
TCTATATAGTGGAGTTTTTGGCACTGAGATGAAATGTGAGATTTTCCTTGGACCTGTATACTATCAACGCCTTCGTCATATGGTCTCAGACAAATTTCAGgtgggcaatcattatttgtgtaccatcttat-tatgtatagttaaagtcgttatctggcttatttttcctccttttctattcgatatcggattgaagatct--

upper sequence: GLYMA17G23500.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G388892_T01 (Zea mays), 5'ss of exon 26
TCTATATAGTGGTGTTTATGGAACGGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaactaattcactgttttgacttcctatataaccaccagcaaaatgatacttctccatgttttctgaa--aatgttaggctttctagatagtggttgtga---
 || |||||||| |||| ||| || ||  |    |||||||| || || |||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||||  | |||   |||| | |  |   |    ||   ||  |   | || |  | | ||       ||   |    |    ||| |  | | ||  || |    
CCTTTATAGTGGAGTTTTTGGCACTGAGATGGACTGTGAGATTTTCATCGGACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtga--ttattttttgttct-atattaaacgctact-tcaatattttcatgcacc-ctatacccatcgagttagcccttaaatttttttaaaatgaatgaggatg

upper sequence: GLYMA17G23500.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 26
TCTATATAGTGGTGTTTATGGAACGGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaactaattca-ctgttttgacttcctatataaccaccag---------caaaatgatacttctccatgttttctgaaaatgttaggctttctagatagtggttgtga-
  | ||||||||   ||  |||   ||||| |  |||||||||||||| || |||||||| || ||  | |||||||||||||| ||||||||||| |||||      |  |  |||  || | ||| | ||| | |   |          | || ||  |||| ||    | |||     || |  |  |    | |   ||| |   | 
ATTGTATAGTGGGTATTTAGGAGTAGAACTGAAGTGTGAGATATTTATGGGGCCTGTTTACTACCAGAGACTGCGTCACATGGTCTCAGACAAATTCCAGgtttttcgacccttctggcttcatttcttttatcatcctgacatatagtctccaactggcacttgtct-catcttcgtgctatatctgaatcataatactctggcttacag

upper sequence: GLYMA17G23500.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 25
TCTATATAGTGGTGTTTATGGAACGGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaactaattcactgttttgacttcctatataaccaccagcaaaatgatacttctccatgtttt-ctgaaaatgttaggctttctagatagtggttgtga---
  | || |||||  ||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||  |  |||    ||   | |   || |||   | |       |  | | |||  || |||| || || || | |||  |   |   |  |  | ||    
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtgactt--ttcgtatttacaattatgtaaatag--agctagggcttacttcatctttatattttgcttaagatataaggtgtgtaattcaaggcatatgttct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19268682|gb|BM884938.1|BM884938
EST:     GACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAG                         GGTTCGATCCTACTGGC
genomic: GACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaactaat ... tctgttatagG-TTCGATC-TACTGGC
EST: gi|6482290|gb|AW201561.1|AW201561
EST:     GACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAG                         GTTCGATCTACTGGCACAATTGACCAGGTCACCCGGCAGNCAATATAAGGA
genomic: GACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaactaat ... tctgttatagGTTCGATCTACTGGCACAATTGACCAGGTCACCCGGCAGCCAATAAAAGGA