Sequence
atgc intronic sequence ATGC exonic sequenceGATTCACTTGGTGGAAACAGCAAAACTGTCATGATAGgtaatactgctgaatgttgattcatggctcaaagaatttgtgtttaagcaagttcctgttttcctcatttgaaatatgcctttcattgagttcattttgt...
Basic information
species | Glycine max |
transcript | GLYMA17G18540.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g02650.1 (Oryza sativa), 5'ss of exon 7
GATTCACTTGGTGGAAACAGCAAAACTGTCATGATAGgtaatactgctgaatgttgattcatggctcaaagaatt-tgtgtttaagcaagttcctgttttcctcatttgaaatatgcctttcattgagttcattttgt
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GACTCTCTAGGTGGAAACAGCAAGACTGTAATGATAGgtaattcatttggttggagattgtttaatcatatttttatatgatttaggattttttctaaataatgcttgtcaaagttccagaattggggtttaaaata-
upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 7
GATTCACTTGGTGGAAACAGCAAAACTGTCATGATAGgtaatactgctgaatgt-tgattcatggctcaaagaatttgtgtttaa---gcaagttc--ctgttttcctcatttgaaatatgcctttcattgagttcattttgt
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GATTCTCTTGGTGGAAATAGTAAAACAGTCATGATAGgtaaacttcttagttgtatgaggtaatcccctggaaatctcttatcagttcacagattcaacttctctctgtgtttgtgttattcttgtag---------------
upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 7
GATTCACTTGGTGGAAACAGCAAAACTGTCATGATAGgtaatactgctgaatgttgattcatggctcaaagaatttgtgtttaa-gcaagttcctgttttcctcatttgaaatatgcctttcattgagttcattttgt-
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GATTCACTTGGTGGAAACAGCAAAACTGTTATGATAGgtaaaatctttatgtttcgtatttccttttactgattgtttaattattgtgacgttatgttttaat--gctgttctgttttatatagaaaatttgaattgtgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151399371|gb|EV269242.1|EV269242EST: GATTCACTTGGTGGAAACAGCAAAACTGTCATGATAG CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCA
genomic: GATTCACTTGGTGGAAACAGCAAAACTGTCATGATAGgtaatactgc ... ttttccccagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTCACTTGGTGGAAACAGCAAAACTGTCATGATAGgtaatactgctgaatgttgattcatggctcaaagaatttgtgtttaagcaagttcctgttttcctcatttgaaatatgcctttcattgagttcattttgt
- - - - TGGTGG
- - - - GGTGGA